Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 2.4e-237 825.1 415 100.0
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.6e-220 769.2 415 94.2
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 5.1e-219 764.2 415 93.5
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 4.6e-204 714.5 415 87.2
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 3.3e-202 708.4 436 82.6
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 3.7e-193 678.3 415 80.0
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 2.9e-190 668.7 414 79.2
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.9e-190 668.7 415 77.8
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.5e-189 665.6 415 78.1
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.6e-188 662.9 415 77.8
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 4.6e-188 661.4 415 78.6
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 4.6e-188 661.4 416 77.6
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 1.0e-187 660.2 415 77.8
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.0e-187 660.2 416 78.6
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.0e-187 660.2 439 73.8
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.0e-187 658.7 415 77.6
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 5.1e-187 657.9 415 79.0
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.1e-186 656.8 415 77.3
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.1e-186 656.8 415 77.8
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 1.1e-186 656.8 415 77.8
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.5e-186 656.4 421 77.4
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 1.5e-186 656.4 415 76.9
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.5e-186 656.4 415 78.3
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.9e-186 656.0 415 77.3
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 4.3e-186 654.8 431 73.8
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 5.7e-186 654.4 416 77.9
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.3e-185 653.3 416 77.6
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 4.8e-185 651.4 416 77.2
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.1e-184 650.2 415 77.1
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 1.4e-184 649.8 416 77.4
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 5.3e-184 647.9 415 76.9
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 6.9e-184 647.5 415 76.9
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 9.0e-184 647.1 422 76.3
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 9.0e-184 647.1 415 75.9
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.2e-183 646.7 415 76.1
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.2e-183 646.7 415 75.2
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.2e-183 646.7 415 77.1
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 2.6e-183 645.6 408 78.4
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 3.4e-183 645.2 415 75.7
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.3e-182 643.3 415 76.4
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 2.9e-182 642.1 415 74.9
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 5.0e-182 641.3 415 75.7
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 8.5e-182 640.6 415 74.9
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.4e-181 639.8 415 75.9
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 1.4e-181 639.8 415 74.9
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 3.2e-181 638.6 364 87.9
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 7.2e-181 637.5 415 74.2
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 7.2e-181 637.5 415 75.2
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 7.2e-181 637.5 416 75.5
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 9.4e-181 637.1 415 75.4
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 1.6e-180 636.3 415 75.9
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 1.6e-180 636.3 415 75.4
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.6e-180 635.2 415 74.7
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 4.6e-180 634.8 425 74.4
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 6.1e-180 634.4 415 76.9
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 1.0e-179 633.6 415 74.2
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 2.3e-179 632.5 415 75.2
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 3.9e-179 631.7 415 75.2
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 1.5e-178 629.8 406 75.1
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.5e-178 629.8 415 74.9
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 2.0e-178 629.4 415 74.7
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.5e-178 629.0 412 75.2
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.3e-178 628.6 414 75.1
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 7.4e-178 627.5 412 74.5
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 9.7e-178 627.1 415 74.2
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 9.7e-178 627.1 409 74.8
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 1.7e-177 626.3 412 74.3
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 3.7e-177 625.2 415 74.5
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 4.8e-177 624.8 410 75.1
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.1e-176 623.6 403 76.4
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.8e-176 622.9 415 74.2
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 3.1e-176 622.1 415 74.2
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.2e-175 620.2 415 74.5
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 1.2e-175 620.2 416 74.0
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.5e-175 619.8 415 74.2
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 2.6e-175 619.0 415 74.9
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 2.6e-175 619.0 415 74.9
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 5.9e-175 617.8 408 75.2
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.0e-174 617.1 411 75.7
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.0e-174 617.1 415 73.5
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.0e-174 617.1 415 74.0
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.7e-174 616.3 408 76.2
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.7e-174 616.3 408 76.2
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.2e-174 615.9 408 74.8
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 6.5e-174 614.4 408 75.7
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.1e-173 613.6 408 76.0
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 1.4e-173 613.2 408 74.3
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 3.2e-173 612.1 408 74.5
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 4.2e-173 611.7 403 75.9
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 5.5e-173 611.3 414 74.4
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 3.0e-171 605.5 415 72.3
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 3.0e-171 605.5 408 74.0
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 4.4e-170 601.7 377 78.8
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.7e-169 599.7 415 72.8
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 4.8e-169 598.2 415 70.6
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 1.1e-168 597.0 505 62.2
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 2.4e-168 595.9 429 70.4
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 5.3e-168 594.7 419 69.9
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 7.0e-168 594.3 419 70.4
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.5e-165 585.9 408 70.3
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 9.4e-165 583.9 416 70.4
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 1.6e-164 583.2 432 67.6
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 2.1e-164 582.8 407 71.7
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.7e-164 581.6 415 70.8
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 6.1e-164 581.3 412 69.4
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 2.0e-162 576.2 419 68.0
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 2.0e-162 576.2 412 70.4
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 7.5e-162 574.3 401 70.3
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 5.5e-157 558.1 415 68.7
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 4.7e-156 555.1 417 66.7
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 1.0e-155 553.9 364 74.7
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.1e-152 543.9 369 71.0
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 3.1e-152 542.3 382 71.2
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 7.7e-151 537.7 424 66.7
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.3e-147 526.2 410 66.8
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 2.4e-144 516.2 425 60.7
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 1.6e-140 503.4 403 64.8
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 3.0e-139 499.2 428 58.4
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.4e-136 490.3 326 74.2
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 4.6e-135 485.3 415 61.7
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 3.0e-134 482.6 412 59.5
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 8.3e-129 464.5 401 58.6
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.6e-124 450.3 408 57.6
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.2e-119 434.1 380 60.0
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 4.7e-116 422.2 381 60.1
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 1.4e-112 410.6 428 50.5
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 3.3e-109 399.4 249 77.9
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 9.3e-104 381.3 426 48.4
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 4.3e-101 372.5 277 68.6
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 1.6e-100 370.5 263 72.2
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 4.5e-98 362.5 201 84.1
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 2.4e-96 356.7 247 72.1
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 4.2e-96 355.9 201 86.1
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 1.8e-94 350.5 443 44.9
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 6.7e-94 348.6 201 85.1
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.8e-91 340.5 427 45.4
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.9e-80 303.9 416 44.0
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.1e-77 294.7 455 40.0
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.9e-69 267.3 305 50.2
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.2e-66 258.1 159 76.7
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.6e-66 256.9 381 42.5
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.7e-63 246.9 447 38.3
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 1.8e-62 244.2 153 73.9
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.4e-59 234.6 342 45.3
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.3e-57 228.0 192 63.5
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.1e-56 224.9 203 61.6
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.5e-56 223.8 215 59.1
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.6e-55 221.1 268 49.3
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.6e-55 219.9 206 59.2
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.8e-49 199.9 123 75.6
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 8.0e-47 192.2 135 70.4
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 1.5e-32 144.8 169 48.5
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 3.6e-31 140.2 290 34.1
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 5.7e-29 132.9 206 42.2
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 8.6e-25 119.0 72 77.8
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 2.5e-24 117.5 72 77.8
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 7.3e-24 115.9 103 56.3
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 1.0e-22 112.1 101 57.4
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 4.0e-22 110.2 66 71.2
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 6.4e-20 102.8 54 83.3
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 2.4e-19 100.9 52 84.6
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.7e-12 78.2 43 76.7
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 2.2e-12 77.8 54 72.2
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-11 75.5 44 72.7
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 7.8e-10 69.3 54 68.5
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 3.9e-09 67.0 226 27.0
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-08 65.5 46 60.9
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 2.1e-07 61.2 215 26.5
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 2.1e-07 61.2 114 32.5
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 2.8e-07 60.8 53 54.7
Cc10_g02440 Coffea canephora HOM05D003484 ORTHO05D004152 3.6e-07 60.5 198 26.3
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 8.1e-07 59.3 55 56.4
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 3.1e-06 57.4 245 28.6
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 8.9e-06 55.8 217 23.5


User provided reference genes

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