Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 7.6e-200 700.3 348 100.0
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.6e-181 639.4 348 91.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 2.8e-178 628.6 331 94.6
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 6.9e-169 597.4 348 84.5
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.0e-120 436.4 318 67.0
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.3e-119 433.7 310 68.1
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 6.5e-119 431.4 312 68.6
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 8.5e-119 431.0 321 65.4
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.9e-118 429.9 312 68.6
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 9.4e-118 427.6 315 67.6
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.6e-117 426.8 321 67.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.1e-117 426.4 312 66.3
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.6e-117 425.6 310 66.5
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.6e-117 425.6 312 66.0
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.8e-116 423.3 310 66.1
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.0e-116 422.5 315 66.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 4.0e-116 422.2 307 69.1
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 5.2e-116 421.8 308 68.5
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 6.8e-116 421.4 319 65.8
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 1.2e-115 420.6 314 65.3
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 3.4e-115 419.1 308 67.5
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 3.4e-115 419.1 312 65.7
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 3.4e-115 419.1 310 67.7
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 9.8e-115 417.5 311 65.0
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.2e-114 416.4 308 67.2
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 2.2e-114 416.4 310 64.2
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.8e-114 416.0 309 67.6
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.7e-114 415.6 312 64.7
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.7e-114 415.6 312 64.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 4.9e-114 415.2 312 66.0
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 1.8e-113 413.3 314 66.2
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 3.1e-113 412.5 312 63.1
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 9.2e-113 411.0 314 64.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.6e-112 410.2 314 64.0
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.6e-112 410.2 314 64.3
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 5.9e-112 408.3 318 64.2
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 7.7e-112 407.9 309 66.0
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 7.7e-112 407.9 315 63.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 7.7e-112 407.9 316 63.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.0e-111 407.5 333 61.0
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.3e-111 407.1 310 65.5
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.3e-111 407.1 309 66.0
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.9e-111 406.0 312 62.5
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 6.6e-111 404.8 302 65.2
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.6e-111 404.4 312 63.1
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.1e-110 404.1 314 62.4
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.1e-110 404.1 314 62.4
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.5e-110 403.7 317 63.1
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.5e-110 403.7 311 65.9
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.9e-110 403.3 311 65.0
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.6e-110 401.7 327 60.9
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 5.6e-110 401.7 314 64.0
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 9.5e-110 401.0 314 62.1
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 9.5e-110 401.0 311 64.0
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.8e-109 399.4 361 57.6
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 6.1e-109 398.3 308 64.9
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.0e-108 397.5 312 61.9
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 3.0e-108 396.0 311 63.7
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.0e-107 393.3 277 67.1
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 9.8e-107 391.0 281 66.9
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.9e-106 389.4 287 65.9
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 6.4e-106 388.3 311 62.1
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.6e-104 383.6 309 60.2
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.7e-104 382.9 321 61.4
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 3.5e-104 382.5 315 60.0
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 7.8e-104 381.3 311 59.5
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.7e-103 380.2 312 61.5
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 8.6e-103 377.9 281 63.0
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.9e-102 376.7 280 62.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.3e-102 374.8 268 69.4
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 9.5e-102 374.4 310 60.3
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.1e-101 373.2 315 60.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 8.0e-101 371.3 280 63.2
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.0e-100 370.9 281 65.1
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.8e-100 370.2 312 59.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 4.9e-98 362.1 281 62.6
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 4.9e-98 362.1 321 57.3
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.1e-97 360.9 311 59.8
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.4e-97 360.5 311 57.6
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.4e-97 360.5 275 65.8
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 2.4e-97 359.8 280 63.2
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.6e-96 357.1 308 58.1
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.7e-96 356.3 320 56.9
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.7e-96 356.3 314 56.4
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 6.0e-96 355.1 306 58.2
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 3.9e-95 352.4 332 55.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 5.0e-95 352.1 327 56.3
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 7.3e-94 348.2 260 67.7
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 7.3e-94 348.2 310 54.5
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 1.2e-93 347.4 306 57.5
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 2.1e-93 346.7 306 57.2
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.7e-93 345.5 308 56.2
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 8.1e-93 344.7 240 71.7
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.1e-92 344.4 306 56.9
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.1e-92 344.4 306 56.9
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.4e-92 344.0 306 57.5
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.4e-92 344.0 306 56.9
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.8e-92 343.6 306 57.5
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.8e-92 343.6 306 56.5
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.8e-92 343.6 306 57.5
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 3.1e-92 342.8 306 57.2
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 4.0e-92 342.4 306 57.2
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 6.8e-92 341.7 325 52.9
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.5e-91 340.5 308 56.8
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.6e-91 339.7 306 55.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 5.8e-91 338.6 312 55.1
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.7e-90 335.9 312 54.5
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 9.2e-89 331.3 249 65.5
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.0e-87 327.8 277 59.6
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 5.1e-87 325.5 279 60.6
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 4.3e-86 322.4 233 70.0
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 6.2e-85 318.5 251 65.3
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 4.0e-84 315.8 310 55.2
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 4.4e-83 312.4 311 55.0
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.1e-81 307.8 278 53.2
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.4e-81 307.4 265 59.2
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 4.6e-80 302.4 279 53.0
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.7e-77 292.4 262 57.6
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.4e-76 290.8 276 53.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 3.2e-73 279.6 283 50.9
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 2.5e-70 270.0 317 44.5
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 5.8e-59 232.3 201 57.7
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.9e-50 202.6 191 51.3
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.9e-47 193.0 168 57.1
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 2.5e-46 190.3 282 40.8
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 4.3e-46 189.5 194 55.2
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.2e-42 177.2 137 59.9
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.5e-38 164.5 109 66.1
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.1e-33 148.3 112 67.0
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 3.4e-27 126.7 113 55.8
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 6.3e-13 79.3 270 30.4
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 9.4e-09 65.5 68 57.4


User provided reference genes

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