Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.6e-156 555.4 304 100.0
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.1e-143 513.5 303 95.0
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 5.7e-135 484.6 302 88.1
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 7.4e-127 457.6 305 83.3
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.1e-125 453.8 305 81.0
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 7.7e-124 447.6 305 81.6
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 3.2e-122 442.2 305 79.7
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 4.7e-121 438.3 305 71.5
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 4.0e-120 435.3 305 71.1
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.5e-119 433.3 305 79.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 2.0e-119 433.0 305 74.1
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 9.7e-119 430.6 307 71.3
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.7e-118 429.9 306 79.7
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.2e-118 429.5 314 70.7
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.7e-118 428.7 305 79.3
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 4.8e-118 428.3 305 79.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.1e-117 427.2 297 70.7
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.8e-117 426.4 305 78.0
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.2e-116 423.7 304 78.9
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.7e-116 422.5 305 77.7
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 5.9e-116 421.4 305 76.7
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 7.7e-116 421.0 305 77.4
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.7e-116 421.0 307 78.2
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 7.7e-116 421.0 306 79.4
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.2e-115 419.5 306 76.8
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 2.9e-115 419.1 305 77.0
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 3.8e-115 418.7 304 76.3
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 3.2e-114 415.6 269 79.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 3.2e-114 415.6 309 71.5
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.6e-113 413.3 320 73.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.6e-113 413.3 307 74.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.7e-113 411.8 304 77.0
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.4e-112 410.2 306 75.2
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.3e-112 409.5 314 68.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 6.8e-112 407.9 309 72.8
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 8.8e-112 407.5 306 76.8
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.5e-111 406.8 310 77.4
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 3.4e-111 405.6 306 70.3
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 5.7e-111 404.8 308 69.8
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.7e-111 404.8 306 69.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 7.5e-111 404.4 308 69.5
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 9.8e-111 404.1 305 75.7
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.3e-110 403.7 311 76.2
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 2.2e-110 402.9 308 70.1
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.7e-110 402.1 305 76.7
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 4.8e-110 401.7 308 69.8
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.1e-109 400.6 305 74.1
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.4e-109 400.2 308 68.8
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.1e-109 399.1 312 74.4
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.1e-109 398.7 311 74.0
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.2e-108 397.1 304 75.0
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.6e-108 396.7 308 72.7
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.0e-107 394.0 307 73.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.9e-107 392.5 307 73.6
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 5.0e-107 391.7 310 66.5
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 8.6e-107 391.0 283 78.4
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-106 390.6 309 66.3
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-106 390.6 310 66.8
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.1e-106 390.6 306 74.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.9e-106 389.8 307 67.1
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 4.7e-105 385.2 310 68.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.8e-104 383.3 307 66.8
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.3e-104 382.9 320 70.9
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.3e-104 382.9 305 72.5
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 3.0e-104 382.5 306 64.4
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 5.2e-104 381.7 340 60.0
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.0e-103 379.8 307 66.1
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.6e-103 379.4 315 69.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 7.5e-103 377.9 311 71.4
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 9.8e-103 377.5 307 72.3
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.2e-102 376.3 308 72.1
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.8e-102 375.9 310 64.2
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-101 374.0 309 63.4
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 9.2e-101 370.9 311 73.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.2e-100 370.5 307 70.4
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.6e-100 370.2 307 66.4
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.7e-100 369.4 317 67.8
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.5e-100 369.0 339 67.3
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 7.8e-100 367.9 320 68.1
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-99 367.1 312 70.5
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.7e-99 366.7 321 68.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.9e-99 365.5 317 67.2
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-97 360.5 357 61.1
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-97 360.5 357 61.1
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.7e-97 358.6 283 76.3
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.4e-96 357.1 321 65.1
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.1e-96 355.9 305 61.6
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 6.8e-96 354.8 288 74.3
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.0e-95 353.2 304 69.4
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.0e-95 353.2 280 75.0
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.6e-95 352.8 265 75.5
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 2.2e-94 349.7 274 72.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 4.9e-94 348.6 305 69.5
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.1e-93 347.4 304 69.1
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.9e-93 346.7 306 59.8
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 5.4e-93 345.1 337 56.1
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-91 340.5 351 62.1
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.3e-91 340.5 351 62.1
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.0e-91 339.3 312 68.6
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 2.5e-90 336.3 258 68.2
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 5.6e-90 335.1 263 76.4
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 7.3e-90 334.7 213 89.7
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.3e-88 329.7 307 58.3
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-87 327.4 310 59.0
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.4e-87 325.5 285 70.5
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.1e-85 320.9 242 79.3
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.2e-85 319.3 213 84.0
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.6e-84 317.0 264 64.8
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.1e-84 316.6 256 74.6
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.8e-84 314.7 256 74.2
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 7.6e-79 298.1 233 67.8
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-77 293.5 297 55.2
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 4.6e-76 288.9 233 66.1
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.9e-70 269.6 231 73.2
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 3.8e-70 269.2 233 73.0
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.2e-69 266.2 231 72.3
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 4.2e-69 265.8 248 60.5
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.5e-68 262.7 245 67.8
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 7.8e-68 261.5 238 59.2
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 6.6e-67 258.5 294 51.7
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.5e-66 256.5 189 81.0
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-65 253.1 214 73.8
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 3.1e-64 249.6 241 68.9
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.7e-62 243.8 231 68.4
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 6.4e-62 241.9 140 82.1
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.7e-60 236.5 234 68.4
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.0e-59 233.0 233 67.8
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.8e-56 223.8 243 63.8
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 9.9e-55 218.0 243 53.1
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.3e-54 217.6 295 45.4
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.2e-53 213.0 235 53.6
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.2e-53 213.0 235 53.6
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.0e-48 196.1 146 81.5
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.8e-47 192.2 243 55.6
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.8e-46 189.5 320 43.8
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.9e-43 179.5 285 42.8
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 8.7e-43 178.3 149 79.2
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-42 177.9 174 55.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.9e-42 177.2 295 46.1
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-41 174.5 158 60.1
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.6e-41 174.1 316 36.4
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 6.1e-36 155.6 244 43.4
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.7e-34 149.1 74 87.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.3e-33 145.6 155 67.7
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.5e-31 141.0 166 50.0
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 6.5e-30 135.6 72 80.6
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 3.0e-27 126.7 72 79.2
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.3e-22 111.3 95 53.7
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.2e-20 104.8 148 41.9
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.6e-20 103.2 91 60.4
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 5.1e-19 99.4 132 37.9
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 9.7e-18 95.1 129 43.4
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.3e-17 94.7 50 78.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.6e-12 77.8 94 50.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.8e-09 67.0 47 66.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 6.3e-09 65.9 74 55.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.1e-08 65.1 45 66.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 2.0e-07 60.8 99 38.4


User provided reference genes

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