Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 2.1e-153 545.8 306 100.0
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.9e-123 445.7 252 94.0
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 2.3e-107 392.9 317 71.6
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 5.4e-101 371.7 255 82.4
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 2.8e-89 332.8 254 71.3
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 5.3e-88 328.6 247 72.5
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 9.9e-87 324.3 252 72.2
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.2e-86 323.2 198 84.8
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 4.9e-86 322.0 245 73.9
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.9e-86 322.0 258 70.9
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.4e-85 320.5 207 81.6
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.9e-85 320.1 194 84.0
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 4.2e-85 318.9 250 71.6
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 7.1e-85 318.2 218 78.0
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.3e-85 317.8 247 70.4
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 1.2e-84 317.4 194 85.6
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.6e-84 317.0 246 70.7
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.7e-84 316.2 220 75.0
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 7.8e-84 314.7 254 70.9
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.0e-83 314.3 235 71.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.0e-83 314.3 246 69.9
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.0e-83 314.3 217 78.3
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.0e-83 314.3 277 65.7
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.3e-83 313.9 247 71.3
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.7e-83 313.5 248 69.8
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.7e-83 313.5 227 74.9
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.3e-83 313.2 196 82.1
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 2.3e-83 313.2 247 70.9
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 3.0e-83 312.8 221 73.3
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 3.0e-83 312.8 222 74.8
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 8.7e-83 311.2 259 67.6
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 8.7e-83 311.2 210 79.5
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.1e-82 310.8 270 66.3
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.1e-82 310.8 196 81.1
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.1e-82 310.8 252 70.6
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.1e-82 310.8 262 69.8
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 1.9e-82 310.1 239 69.5
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 4.3e-82 308.9 259 70.3
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 4.3e-82 308.9 197 80.7
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 4.3e-82 308.9 258 68.6
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 5.6e-82 308.5 222 75.7
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 5.6e-82 308.5 254 71.7
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 7.3e-82 308.1 192 82.8
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 9.6e-82 307.8 235 70.6
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.3e-81 307.4 250 70.0
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.6e-81 307.0 251 68.1
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 2.1e-81 306.6 246 70.7
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.1e-81 306.6 254 71.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 3.6e-81 305.8 228 73.2
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.6e-81 305.8 255 67.8
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.6e-81 305.8 278 64.0
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 4.8e-81 305.4 234 71.4
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 4.8e-81 305.4 230 72.2
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 6.2e-81 305.1 263 65.0
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 8.1e-81 304.7 251 69.3
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.1e-80 304.3 245 71.0
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.1e-80 304.3 252 68.3
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.8e-80 303.5 238 70.2
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.1e-80 302.8 251 68.5
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 3.1e-80 302.8 250 68.8
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 4.0e-80 302.4 257 67.7
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 4.0e-80 302.4 226 73.5
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 5.3e-80 302.0 260 66.2
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 9.0e-80 301.2 259 67.2
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 1.2e-79 300.8 261 66.7
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.2e-79 300.8 197 78.7
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 1.2e-79 300.8 227 72.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.5e-79 300.4 265 63.8
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 4.5e-79 298.9 215 74.9
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 4.5e-79 298.9 188 81.9
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 4.5e-79 298.9 188 81.9
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 7.6e-79 298.1 231 69.7
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.3e-78 297.4 244 69.7
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 1.7e-78 297.0 196 78.1
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.7e-78 297.0 188 80.9
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.2e-78 296.6 223 72.2
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.8e-78 295.8 262 66.0
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 6.4e-78 295.0 243 65.8
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 6.4e-78 295.0 232 69.8
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.1e-77 294.3 210 73.8
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.4e-77 293.9 256 65.6
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.9e-77 293.5 205 75.6
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.9e-77 293.5 214 70.6
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 3.2e-77 292.7 205 75.1
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 4.2e-77 292.4 217 71.0
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 4.2e-77 292.4 192 80.7
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 5.4e-77 292.0 214 70.6
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 7.1e-77 291.6 216 70.8
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.2e-76 290.8 253 66.0
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 2.7e-76 289.7 204 72.5
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 4.6e-76 288.9 216 69.4
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 6.0e-76 288.5 205 74.6
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.8e-75 287.0 262 62.2
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 2.3e-75 286.6 262 62.6
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 3.9e-75 285.8 205 73.7
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.9e-75 285.8 209 75.1
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 6.7e-75 285.0 261 61.7
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.1e-74 284.3 224 68.3
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.3e-73 280.8 196 75.5
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.8e-73 279.6 267 63.3
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 6.2e-73 278.5 272 59.9
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.4e-72 276.6 229 69.0
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 2.0e-71 273.5 322 54.3
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 7.6e-71 271.6 196 71.4
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 7.6e-71 271.6 242 64.0
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 2.5e-69 266.5 188 68.6
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 9.0e-64 248.1 210 67.1
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 4.2e-61 239.2 192 62.0
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.1e-58 231.1 182 64.8
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.2e-57 226.9 253 53.0
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.1e-56 224.6 202 64.9
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.4e-56 224.2 179 62.6
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 5.3e-56 222.2 230 54.3
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 5.3e-56 222.2 180 61.7
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.8e-54 216.1 198 58.1
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 2.5e-53 213.4 185 56.8
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 7.2e-53 211.8 203 59.1
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.1e-50 204.5 153 66.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 4.5e-47 192.6 224 50.9
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.1e-45 188.0 117 82.9
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.4e-43 181.0 174 53.4
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 2.4e-40 170.2 180 53.3
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 5.9e-31 139.0 186 42.5
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 5.7e-26 122.5 87 75.9
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 1.9e-21 107.5 121 53.7
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 5.5e-21 105.9 123 52.8
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.6e-20 103.2 242 34.7
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.0e-18 97.4 88 67.0
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 3.4e-18 96.7 53 98.1
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 5.7e-18 95.9 84 60.7
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 5.4e-08 62.8 48 58.3
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 2.7e-07 60.5 87 47.1
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 2.7e-07 60.5 48 56.2
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 7.8e-07 58.9 40 65.0
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 1.0e-06 58.5 40 70.0
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 1.0e-06 58.5 175 31.4


User provided reference genes

Program Settings