Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 2.3e-20 101.3 51 100.0
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 4.2e-14 80.5 45 88.9
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 9.2e-14 79.3 55 76.4
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.2e-13 79.0 45 88.9
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.2e-13 79.0 45 88.9
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 2.1e-13 78.2 41 95.1
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 2.7e-13 77.8 45 84.4
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 2.7e-13 77.8 41 95.1
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 2.7e-13 77.8 47 87.2
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 2.7e-13 77.8 41 92.7
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 4.6e-13 77.0 45 86.7
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.6e-13 77.0 41 92.7
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 6.0e-13 76.6 41 92.7
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 6.0e-13 76.6 45 84.4
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 6.0e-13 76.6 41 90.2
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.0e-12 75.9 40 95.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 1.0e-12 75.9 41 87.8
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 1.0e-12 75.9 45 84.4
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 1.3e-12 75.5 41 90.2
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.3e-12 74.7 45 82.2
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 2.3e-12 74.7 47 78.7
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 3.0e-12 74.3 55 76.4
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 3.0e-12 74.3 41 90.2
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.0e-12 74.3 41 90.2
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 3.9e-12 73.9 41 87.8
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 5.1e-12 73.6 45 80.0
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 5.1e-12 73.6 45 77.8
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 5.1e-12 73.6 41 85.4
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 5.1e-12 73.6 41 85.4
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 6.6e-12 73.2 45 80.0
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 6.6e-12 73.2 45 82.2
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 8.7e-12 72.8 41 85.4
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.1e-11 72.4 45 82.2
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.1e-11 72.4 41 82.9
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.1e-11 72.4 42 83.3
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.1e-11 72.4 41 85.4
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.1e-11 72.4 41 82.9
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.5e-11 72.0 45 80.0
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.5e-11 72.0 41 85.4
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 1.5e-11 72.0 41 82.9
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.9e-11 71.6 44 79.5
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.9e-11 71.6 42 83.3
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.9e-11 71.6 47 76.6
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.5e-11 71.2 41 82.9
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.5e-11 71.2 41 82.9
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.5e-11 71.2 41 82.9
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 3.3e-11 70.9 44 79.5
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.3e-11 70.9 41 80.5
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 4.3e-11 70.5 41 90.2
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 4.3e-11 70.5 41 85.4
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.3e-11 70.5 40 85.0
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 4.3e-11 70.5 41 85.4
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.3e-11 70.5 45 80.0
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 5.6e-11 70.1 45 73.3
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 5.6e-11 70.1 40 85.0
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 7.3e-11 69.7 45 77.8
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 9.6e-11 69.3 41 82.9
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.3e-10 68.9 45 77.8
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 1.3e-10 68.9 41 82.9
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-10 68.9 41 82.9
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.6e-10 68.6 40 85.0
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.6e-10 68.6 48 77.1
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.6e-10 68.6 45 80.0
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.6e-10 68.6 41 85.4
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 2.1e-10 68.2 45 75.6
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.8e-10 67.8 41 78.0
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 3.6e-10 67.4 41 78.0
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 4.8e-10 67.0 41 87.8
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 8.1e-10 66.2 41 85.4
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.1e-09 64.3 40 85.0
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.1e-09 64.3 40 85.0
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.1e-09 64.3 40 85.0
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 3.1e-09 64.3 41 78.0
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 5.3e-09 63.5 47 68.1
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 5.3e-09 63.5 41 75.6
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 6.9e-09 63.2 41 80.5
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.0e-09 62.8 41 78.0
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 1.5e-08 62.0 36 83.3
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 2.0e-08 61.6 46 65.2
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 2.0e-08 61.6 35 85.7
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.4e-08 60.8 31 93.5
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 3.4e-08 60.8 31 93.5
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 7.6e-08 59.7 38 76.3
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 7.6e-08 59.7 38 76.3
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 7.6e-08 59.7 31 90.3
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 7.6e-08 59.7 45 68.9
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 9.9e-08 59.3 31 93.5
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.3e-07 58.9 31 87.1
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.7e-07 58.5 32 84.4
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 1.7e-07 58.5 31 90.3
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 2.9e-07 57.8 39 79.5
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 2.9e-07 57.8 31 87.1
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 3.8e-07 57.4 31 87.1
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 3.8e-07 57.4 31 87.1
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 4.9e-07 57.0 30 93.3
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 4.9e-07 57.0 31 87.1
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 6.4e-07 56.6 43 72.1
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 8.4e-07 56.2 32 81.2
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 8.4e-07 56.2 31 87.1
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 1.1e-06 55.8 41 68.3
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-06 55.5 31 83.9
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-06 55.5 31 83.9
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 1.4e-06 55.5 34 79.4
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 1.9e-06 55.1 48 62.5
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 3.2e-06 54.3 43 65.1
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.2e-06 54.3 30 90.0
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 4.2e-06 53.9 27 92.6
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 5.4e-06 53.5 26 100.0
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 7.1e-06 53.1 30 86.7
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.1e-06 53.1 30 83.3
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 7.1e-06 53.1 30 86.7
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 9.3e-06 52.8 31 83.9


User provided reference genes

Program Settings