Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.5e-242 842.4 436 100.0
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 7.2e-232 807.0 436 96.3
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 2.6e-221 771.9 454 89.2
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.1e-195 686.8 389 88.4
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 1.5e-176 623.2 436 71.1
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 2.5e-176 622.5 435 71.7
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 3.3e-176 622.1 435 71.5
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 5.6e-176 621.3 436 70.6
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 9.5e-176 620.5 436 71.1
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.6e-175 619.8 437 73.0
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 3.6e-175 618.6 419 73.7
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 4.7e-175 618.2 438 70.5
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 6.2e-175 617.8 435 71.7
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 8.1e-175 617.5 436 71.1
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 1.1e-174 617.1 434 70.5
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.4e-174 616.7 436 70.9
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 2.3e-174 615.9 435 71.3
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 5.2e-174 614.8 429 70.6
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 8.9e-174 614.0 418 71.5
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 8.9e-174 614.0 435 70.8
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 8.9e-174 614.0 435 70.6
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 7.5e-173 610.9 441 69.6
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 9.9e-173 610.5 434 69.4
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 2.9e-172 609.0 436 70.2
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 1.9e-171 606.3 434 69.6
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 4.1e-171 605.1 425 72.5
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 7.1e-171 604.4 430 70.7
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.6e-170 603.2 432 70.6
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 4.6e-170 601.7 437 71.2
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 7.8e-170 600.9 418 73.0
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 1.3e-169 600.1 424 69.3
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 1.7e-169 599.7 435 69.2
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.9e-169 598.6 410 72.4
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 5.1e-169 598.2 416 71.2
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.3e-168 595.5 439 67.7
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 7.3e-168 594.3 419 71.4
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.2e-167 593.6 418 69.9
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.1e-167 592.8 405 73.1
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 3.6e-167 592.0 419 70.9
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 3.6e-167 592.0 419 71.4
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 6.2e-167 591.3 424 70.5
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 6.8e-166 587.8 408 71.1
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 5.8e-165 584.7 405 72.1
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 7.6e-165 584.3 429 68.5
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 2.9e-164 582.4 424 68.6
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 2.9e-164 582.4 435 70.1
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 3.8e-164 582.0 409 71.1
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 6.4e-164 581.3 428 68.5
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 6.4e-164 581.3 435 69.7
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 6.4e-164 581.3 407 69.8
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 8.4e-164 580.9 438 67.8
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.2e-163 578.9 435 69.2
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 5.4e-163 578.2 415 68.9
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.6e-162 576.6 408 70.1
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 4.6e-162 575.1 411 69.6
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 1.3e-161 573.5 421 68.4
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 3.9e-161 572.0 400 70.2
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 2.5e-160 569.3 415 69.6
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 3.3e-160 568.9 424 67.0
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 4.3e-160 568.5 404 70.3
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 4.3e-160 568.5 414 70.5
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 5.6e-160 568.2 430 67.9
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 7.3e-160 567.8 415 71.3
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 7.3e-160 567.8 425 66.6
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 4.8e-159 565.1 423 66.0
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 3.1e-158 562.4 404 68.8
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 8.4e-156 554.3 379 72.8
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 1.4e-155 553.5 409 66.0
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 2.4e-155 552.7 417 66.9
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 3.5e-154 548.9 405 66.4
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 4.6e-154 548.5 408 65.9
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 6.0e-154 548.1 425 66.1
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 7.8e-154 547.7 404 68.1
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 1.0e-153 547.4 416 65.9
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 3.0e-153 545.8 431 64.0
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 8.7e-153 544.3 486 60.1
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.5e-152 543.5 429 65.5
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 2.5e-152 542.7 415 67.7
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 4.8e-151 538.5 526 55.7
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 1.2e-149 533.9 417 66.2
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.5e-149 533.5 443 62.5
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 5.8e-149 531.6 392 67.9
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 5.8e-149 531.6 380 72.1
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 3.8e-148 528.9 414 64.5
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 8.4e-148 527.7 389 65.6
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 1.1e-147 527.3 424 65.1
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 1.4e-147 526.9 426 63.8
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 1.4e-147 526.9 426 63.8
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 4.0e-142 508.8 363 71.9
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 2.6e-141 506.1 363 72.2
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 4.2e-139 498.8 405 61.5
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.7e-135 485.7 369 69.1
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 4.5e-133 478.8 394 60.9
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 3.3e-128 462.6 321 71.7
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 4.3e-128 462.2 404 57.4
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 3.8e-124 449.1 418 56.0
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 8.5e-124 448.0 397 57.7
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 2.1e-114 416.8 320 64.7
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 6.7e-113 411.8 426 55.2
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.8e-110 403.7 303 63.4
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 2.7e-106 389.8 306 66.7
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 5.2e-105 385.6 322 67.7
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 8.2e-103 378.3 393 52.2
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.3e-97 360.1 252 72.2
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.1e-91 341.3 391 47.8
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.8e-89 334.0 331 57.4
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 1.2e-82 311.2 223 75.3
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 1.0e-81 308.1 211 68.2
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.1e-78 296.2 201 77.6
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.5e-75 287.7 389 45.5
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.8e-65 254.2 391 40.9
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.2e-47 194.1 144 70.1
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.3e-44 184.1 120 75.8
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 8.1e-42 175.6 128 71.1
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.0e-40 171.0 128 69.5
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 4.4e-40 169.9 112 75.0
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.8e-39 166.8 128 68.0
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 2.4e-33 147.5 105 67.6
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.0e-33 146.7 104 74.0
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 1.3e-28 131.7 87 72.4
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 1.3e-28 131.7 87 72.4
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.6e-24 117.5 92 59.8
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 2.2e-23 114.4 94 63.8
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.0e-20 105.5 94 60.6
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 8.7e-20 102.4 66 60.6
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 2.5e-19 100.9 86 58.1
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 2.6e-16 90.9 103 52.4
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 1.0e-15 89.0 49 81.6
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 1.9e-14 84.7 105 50.5
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 4.2e-14 83.6 242 36.4
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 1.1e-11 75.5 41 75.6
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 5.7e-11 73.2 51 70.6
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 4.8e-10 70.1 41 75.6


User provided reference genes

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