Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 8.4e-92 340.5 192 100.0
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 2.4e-75 285.8 192 77.6
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.7e-65 250.8 192 70.3
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.4e-57 226.9 192 65.1
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 6.7e-33 144.8 196 43.4
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 8.8e-33 144.4 188 43.1
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.6e-32 142.9 201 43.8
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 4.4e-32 142.1 194 43.8
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.4e-32 142.1 192 42.2
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.3e-31 140.6 187 43.3
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 2.8e-31 139.4 186 43.0
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 2.8e-31 139.4 189 43.4
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 3.7e-31 139.0 188 44.7
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 4.8e-31 138.7 191 42.4
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 4.8e-31 138.7 191 42.4
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.1e-30 137.5 195 42.1
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 1.8e-30 136.7 199 41.2
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 2.4e-30 136.3 188 42.6
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.4e-30 136.3 188 41.0
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 3.1e-30 136.0 192 40.6
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.3e-30 135.2 192 44.8
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 5.3e-30 135.2 181 43.6
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 9.1e-30 134.4 186 43.5
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 9.1e-30 134.4 165 43.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 9.1e-30 134.4 192 41.1
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.2e-29 134.0 192 40.1
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.2e-29 134.0 190 42.1
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 2.0e-29 133.3 196 42.3
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 3.5e-29 132.5 193 40.4
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 3.5e-29 132.5 192 39.6
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 3.5e-29 132.5 191 40.3
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 4.5e-29 132.1 192 43.8
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.5e-29 132.1 192 43.8
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 7.7e-29 131.3 190 39.5
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.3e-28 130.6 198 40.4
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 3.8e-28 129.0 194 39.2
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 6.5e-28 128.3 192 42.7
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 6.5e-28 128.3 193 38.9
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.1e-27 127.5 195 39.5
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.1e-27 127.5 198 38.4
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 2.5e-27 126.3 165 41.8
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 2.5e-27 126.3 199 47.7
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 4.2e-27 125.6 157 42.7
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 5.5e-27 125.2 167 41.3
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 7.2e-27 124.8 157 43.9
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 1.2e-26 124.0 163 42.9
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.2e-26 124.0 196 39.3
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 1.6e-26 123.6 196 37.8
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.1e-26 123.2 129 50.4
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 2.7e-26 122.9 196 37.2
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 3.6e-26 122.5 195 35.9
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 3.6e-26 122.5 196 40.8
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 3.6e-26 122.5 196 40.8
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 8.0e-26 121.3 200 37.0
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.0e-25 120.9 197 38.1
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.0e-25 120.9 184 39.1
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.4e-25 120.6 196 36.7
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 2.3e-25 119.8 196 36.7
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.3e-25 119.8 196 40.3
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 2.3e-25 119.8 191 43.5
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.3e-25 119.8 189 38.1
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.3e-25 119.8 183 38.8
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 3.0e-25 119.4 193 40.4
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 3.0e-25 119.4 185 38.9
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 4.0e-25 119.0 149 42.3
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 4.0e-25 119.0 193 36.8
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 4.0e-25 119.0 164 40.9
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 5.2e-25 118.6 196 35.2
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 2.0e-24 116.7 196 35.7
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 2.0e-24 116.7 196 36.2
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 2.0e-24 116.7 196 36.2
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 2.0e-24 116.7 187 42.2
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 3.4e-24 115.9 190 38.9
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 5.7e-24 115.2 191 35.6
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 5.7e-24 115.2 191 35.6
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 5.7e-24 115.2 159 39.0
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 7.5e-24 114.8 158 41.1
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 1.3e-23 114.0 157 40.8
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.2e-23 113.2 117 48.7
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 3.7e-23 112.5 99 54.5
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 8.3e-23 111.3 164 41.5
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.1e-22 110.9 206 34.0
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.1e-22 110.9 159 37.1
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-22 110.5 198 35.9
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-22 110.5 198 35.9
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 2.4e-22 109.8 183 35.0
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 2.4e-22 109.8 192 37.0
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 2.4e-22 109.8 196 35.2
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 3.1e-22 109.4 117 44.4
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 4.1e-22 109.0 199 37.7
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 5.4e-22 108.6 164 38.4
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 7.0e-22 108.2 189 36.5
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 7.0e-22 108.2 159 34.0
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 9.1e-22 107.8 189 36.5
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 9.1e-22 107.8 118 47.5
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 1.6e-21 107.1 190 35.8
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 2.7e-21 106.3 187 35.8
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 2.7e-21 106.3 189 36.5
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 3.5e-21 105.9 154 38.3
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 4.5e-21 105.5 160 41.2
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.0e-20 104.4 184 37.0
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 2.3e-20 103.2 164 40.2
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.9e-20 102.8 150 38.7
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.9e-20 102.8 164 46.3
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.8e-20 102.4 156 38.5
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 6.6e-20 101.7 168 38.7
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.1e-19 100.9 186 37.6
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.1e-19 100.9 186 37.6
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 1.5e-19 100.5 175 37.1
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 1.5e-19 100.5 156 40.4
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.9e-19 100.1 186 37.6
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 2.5e-19 99.8 165 37.6
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 3.3e-19 99.4 162 37.0
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 4.2e-19 99.0 169 35.5
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.2e-19 99.0 163 38.0
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 7.2e-19 98.2 191 36.1
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 7.2e-19 98.2 158 38.0
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 1.2e-18 97.4 152 36.8
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.6e-18 97.1 124 43.5
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 1.6e-18 97.1 161 36.0
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.6e-18 97.1 186 34.9
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 2.8e-18 96.3 165 37.0
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 4.7e-18 95.5 165 35.8
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 4.7e-18 95.5 161 34.8
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 6.1e-18 95.1 192 35.9
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 8.0e-18 94.7 180 36.1
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 8.0e-18 94.7 161 34.8
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 3.0e-17 92.8 192 35.4
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 4.4e-16 89.0 183 33.3
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 5.7e-16 88.6 165 37.0
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 7.5e-16 88.2 107 46.7
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 9.8e-16 87.8 161 35.4
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.2e-15 86.7 156 42.3
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 2.8e-15 86.3 154 35.1
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 3.7e-15 85.9 175 33.1
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 4.9e-15 85.5 118 40.7
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.1e-14 84.3 151 33.8
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 1.1e-14 84.3 106 43.4
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 7.0e-14 81.6 180 32.8
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.0e-14 81.6 114 42.1
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 2.0e-13 80.1 180 32.2
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 2.0e-13 80.1 109 41.3
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 7.8e-13 78.2 165 33.3
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.0e-12 75.5 111 39.6
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 5.0e-12 75.5 160 31.9
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 6.6e-12 75.1 167 33.5
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 2.8e-10 69.7 153 30.7
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 5.2e-09 65.5 114 36.0
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.2e-08 64.3 194 29.9
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 2.0e-08 63.5 106 34.9
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 9.8e-08 61.2 120 32.5
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.1e-06 57.8 118 32.2
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.9e-06 57.0 111 33.3
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 2.4e-06 56.6 48 58.3
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 3.2e-06 56.2 86 39.5
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 4.1e-06 55.8 124 32.3
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 5.4e-06 55.5 114 29.8


User provided reference genes

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