Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 3.6e-106 388.3 195 100.0
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 7.7e-101 370.5 188 98.4
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 1.2e-93 346.7 191 91.6
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 6.7e-89 330.9 191 85.3
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 1.5e-75 286.6 194 74.7
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 4.0e-73 278.5 193 74.1
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.0e-72 276.2 198 67.7
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 2.6e-72 275.8 191 71.7
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.3e-71 273.5 192 71.9
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 2.2e-71 272.7 187 71.7
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 3.7e-71 271.9 199 69.3
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 3.7e-71 271.9 196 69.9
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 6.3e-71 271.2 199 69.8
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 6.3e-71 271.2 194 71.6
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 1.1e-70 270.4 192 72.4
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 1.1e-70 270.4 192 74.5
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.8e-70 269.6 191 70.7
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 1.8e-70 269.6 189 71.4
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.8e-70 269.6 193 73.1
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 1.8e-70 269.6 192 70.8
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 2.4e-70 269.2 191 72.8
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 2.4e-70 269.2 191 70.7
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 3.1e-70 268.9 191 70.7
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 3.1e-70 268.9 191 71.7
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 4.1e-70 268.5 193 73.1
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 5.4e-70 268.1 192 73.4
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 9.2e-70 267.3 193 70.5
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 9.2e-70 267.3 200 69.0
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 4.5e-69 265.0 192 71.4
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 5.9e-69 264.6 191 70.2
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.0e-68 263.8 196 68.9
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 1.0e-68 263.8 199 67.8
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.3e-68 263.5 200 68.0
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.3e-68 263.5 200 68.0
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.7e-68 263.1 194 69.1
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 2.3e-68 262.7 190 71.1
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 2.9e-68 262.3 182 74.7
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 2.9e-68 262.3 198 67.7
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 3.8e-68 261.9 200 67.5
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 5.0e-68 261.5 191 71.2
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 8.6e-68 260.8 196 68.4
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 1.1e-67 260.4 193 67.4
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 1.5e-67 260.0 192 69.8
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 2.5e-67 259.2 192 69.8
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 2.5e-67 259.2 191 69.1
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 4.3e-67 258.5 193 67.9
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 7.3e-67 257.7 200 66.5
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 2.1e-66 256.1 198 66.2
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 2.8e-66 255.8 197 66.0
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 4.7e-66 255.0 192 70.3
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 1.0e-65 253.8 194 67.5
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 1.4e-65 253.4 195 65.6
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 1.4e-65 253.4 195 65.6
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 1.8e-65 253.1 195 65.6
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 1.8e-65 253.1 197 67.0
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 1.8e-65 253.1 197 67.0
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 2.3e-65 252.7 195 66.2
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 3.0e-65 252.3 189 67.7
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 5.2e-65 251.5 226 62.4
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 6.8e-65 251.1 198 66.2
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 6.8e-65 251.1 195 64.6
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 1.2e-64 250.4 195 64.6
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 2.0e-64 249.6 195 64.6
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 2.0e-64 249.6 192 67.7
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 3.4e-64 248.8 190 67.4
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 5.7e-64 248.1 194 66.0
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 1.7e-63 246.5 195 64.1
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 2.2e-63 246.1 195 63.1
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 2.9e-63 245.7 189 66.1
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 2.9e-63 245.7 189 66.1
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.9e-63 245.7 198 67.7
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 3.7e-63 245.4 192 65.6
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 4.9e-63 245.0 196 62.8
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 4.9e-63 245.0 189 65.1
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 6.4e-63 244.6 186 68.3
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.1e-62 243.8 195 63.1
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 1.4e-62 243.4 204 62.3
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.4e-62 242.7 189 66.7
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 9.2e-62 240.7 195 60.5
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 1.6e-61 240.0 194 64.4
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 1.6e-61 240.0 194 64.4
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 2.7e-61 239.2 195 62.6
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 3.5e-61 238.8 189 66.1
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 3.5e-61 238.8 235 57.9
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 5.9e-61 238.0 191 64.9
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 7.8e-61 237.7 196 62.2
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 1.3e-60 236.9 191 63.4
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 9.5e-59 230.7 197 60.9
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 2.1e-58 229.6 197 60.4
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 8.0e-58 227.6 181 64.6
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 1.8e-57 226.5 191 60.7
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 3.4e-56 222.2 188 60.6
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 3.7e-55 218.8 188 61.7
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 3.2e-54 215.7 188 61.7
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 5.4e-54 214.9 187 60.4
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 9.2e-54 214.2 177 63.8
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 1.2e-53 213.8 159 68.6
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 2.0e-53 213.0 186 58.6
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 4.6e-53 211.8 184 61.4
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 1.0e-52 210.7 187 59.4
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.3e-52 209.5 281 47.7
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 1.9e-51 206.5 186 55.9
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 7.3e-51 204.5 188 57.4
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 1.1e-49 200.7 184 56.5
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 6.8e-49 198.0 183 58.5
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 1.8e-41 173.3 152 57.9
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 5.4e-38 161.8 177 52.0
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 6.6e-36 154.8 179 46.9
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 2.4e-30 136.3 117 63.2
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 7.3e-27 124.8 179 41.3
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 2.1e-26 123.2 114 62.3
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 3.8e-23 112.5 114 55.3
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 7.1e-22 108.2 117 54.7
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 8.1e-18 94.7 55 78.2
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 6.0e-13 78.6 77 51.9
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.3e-12 77.4 179 32.4
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.1e-11 74.3 47 72.3
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 6.2e-10 68.6 37 86.5
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 3.4e-08 62.8 58 63.8
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 4.9e-07 58.9 198 30.8


User provided reference genes

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