Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 3.3e-256 887.9 446 100.0
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 5.4e-150 535.0 304 86.8
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 1.4e-145 520.4 360 74.7
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 2.3e-124 449.9 306 74.5
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 2.9e-79 300.1 290 56.6
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 8.5e-79 298.5 290 56.6
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 4.2e-78 296.2 284 57.0
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 7.2e-78 295.4 289 56.1
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 9.4e-78 295.0 281 57.3
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 1.6e-77 294.3 265 58.9
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 2.1e-77 293.9 228 62.7
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 2.1e-77 293.9 259 59.1
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 2.7e-77 293.5 214 66.4
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 3.6e-77 293.1 223 64.1
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 4.7e-77 292.7 225 64.0
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.7e-77 292.7 281 56.6
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.7e-77 292.7 225 64.0
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 6.1e-77 292.4 285 55.4
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 7.9e-77 292.0 299 52.5
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 1.4e-76 291.2 250 58.8
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 2.3e-76 290.4 296 55.1
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 3.9e-76 289.7 289 54.3
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.9e-76 289.7 225 63.6
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 3.9e-76 289.7 295 54.2
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 8.8e-76 288.5 247 59.1
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 3.3e-75 286.6 247 59.1
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 5.7e-75 285.8 213 65.7
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 5.7e-75 285.8 213 65.7
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 5.7e-75 285.8 230 61.7
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 7.4e-75 285.4 213 65.3
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 7.4e-75 285.4 291 55.0
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 1.3e-74 284.6 221 62.4
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 1.3e-74 284.6 239 61.5
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.7e-74 284.3 247 58.3
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 2.2e-74 283.9 255 59.2
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 2.2e-74 283.9 203 66.5
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 4.8e-74 282.7 247 57.9
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 8.2e-74 282.0 213 64.8
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 8.2e-74 282.0 213 65.7
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 8.2e-74 282.0 209 66.5
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.8e-73 280.8 239 61.9
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 2.4e-73 280.4 225 64.4
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 3.1e-73 280.0 194 70.1
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 5.3e-73 279.3 211 67.3
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 2.0e-72 277.3 211 67.8
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 3.5e-72 276.6 220 62.7
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 3.5e-72 276.6 287 53.3
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 4.5e-72 276.2 220 62.7
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 4.5e-72 276.2 212 66.0
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 4.5e-72 276.2 213 64.3
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 7.7e-72 275.4 207 65.7
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 1.7e-71 274.2 211 64.5
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 2.2e-71 273.9 214 65.4
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 2.2e-71 273.9 232 59.1
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 2.2e-71 273.9 230 63.0
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 2.9e-71 273.5 216 64.8
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 2.9e-71 273.5 211 62.1
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 5.0e-71 272.7 228 55.3
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 1.9e-70 270.8 290 51.7
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 2.5e-70 270.4 214 64.5
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 2.5e-70 270.4 214 64.0
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 3.2e-70 270.0 192 70.3
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 4.2e-70 269.6 258 54.3
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 7.2e-70 268.9 232 59.1
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 7.2e-70 268.9 218 61.9
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 9.4e-70 268.5 258 53.9
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 1.2e-69 268.1 226 61.5
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 1.6e-69 267.7 214 63.6
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 4.7e-69 266.2 284 51.8
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.0e-68 265.0 219 59.8
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.0e-68 265.0 219 59.8
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 1.8e-68 264.2 218 63.3
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 3.0e-68 263.5 306 49.3
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 3.0e-68 263.5 303 50.5
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 5.2e-68 262.7 225 60.0
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.7e-68 262.3 209 61.2
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 8.8e-68 261.9 212 61.8
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 8.8e-68 261.9 208 62.0
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 2.6e-67 260.4 207 61.4
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 4.4e-67 259.6 201 63.2
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 7.4e-67 258.8 233 57.1
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 8.2e-66 255.4 214 58.9
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 1.8e-65 254.2 205 62.9
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 5.3e-65 252.7 210 58.1
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 1.6e-64 251.1 189 64.0
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 1.6e-64 251.1 209 61.2
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 1.3e-63 248.1 197 59.4
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 3.8e-63 246.5 258 51.9
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 1.5e-62 244.6 208 60.6
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 7.2e-62 242.3 200 59.0
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 6.1e-61 239.2 209 59.3
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 8.0e-61 238.8 209 59.3
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 1.2e-59 235.0 196 58.7
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 1.3e-58 231.5 198 57.6
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 8.3e-58 228.8 221 53.8
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 8.3e-58 228.8 270 47.4
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 9.1e-57 225.3 206 54.9
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 1.7e-55 221.1 217 52.5
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 2.5e-54 217.2 190 55.3
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 3.0e-52 210.3 228 49.1
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 2.0e-48 197.6 178 58.4
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 1.3e-47 194.9 194 53.1
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 4.7e-45 186.4 141 64.5
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.0e-44 185.3 158 59.5
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.4e-43 179.9 200 50.5
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 3.3e-38 163.7 205 44.9
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 1.0e-36 158.7 160 53.1
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 3.1e-36 157.1 206 46.1
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 4.0e-36 156.8 133 58.6
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 6.8e-36 156.0 231 39.0
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 5.8e-35 152.9 199 40.7
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 7.5e-35 152.5 283 35.0
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 4.6e-32 143.3 108 63.9
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 5.6e-30 136.3 109 61.5
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 6.2e-29 132.9 117 53.8
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 1.8e-28 131.3 143 52.4
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 5.4e-25 119.8 99 57.6
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 1.7e-23 114.8 97 56.7
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 2.3e-23 114.4 125 50.4
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 8.6e-23 112.5 139 43.9
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 2.8e-21 107.5 180 36.7
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.9e-15 87.0 64 68.8
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 2.8e-13 80.9 73 52.1
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 1.1e-12 79.0 69 53.6


User provided reference genes

Program Settings