Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 3.2e-74 282.0 176 100.0
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 4.0e-64 248.4 170 88.8
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 5.2e-64 248.1 181 87.3
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.0e-51 207.2 180 70.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.3e-51 206.8 174 62.6
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 9.5e-42 174.1 172 56.4
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.6e-41 172.2 178 51.1
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.8e-40 169.9 177 48.0
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.2e-39 167.2 174 48.3
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.0e-39 166.4 177 52.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.3e-38 163.7 179 49.2
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.3e-38 163.7 171 48.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.7e-38 163.3 170 51.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.1e-37 160.6 181 47.5
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.4e-37 160.2 161 50.9
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.4e-37 160.2 180 47.8
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 5.4e-37 158.3 161 50.3
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 7.1e-37 157.9 173 48.6
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.2e-37 157.5 183 44.8
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.7e-36 156.0 185 43.2
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.7e-36 156.0 180 45.6
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 3.5e-36 155.6 184 47.3
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 4.6e-36 155.2 194 51.5
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 7.8e-36 154.5 183 44.3
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.0e-35 154.1 174 44.3
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.3e-35 153.7 174 54.0
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.3e-35 152.9 173 45.1
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.9e-35 152.1 172 44.8
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 5.1e-35 151.8 178 46.6
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.6e-35 151.4 193 47.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 8.6e-35 151.0 182 45.1
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 8.6e-35 151.0 174 46.0
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.1e-34 150.6 182 50.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.5e-34 150.2 179 46.4
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.5e-34 149.4 166 48.8
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 2.5e-34 149.4 172 45.9
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 5.6e-34 148.3 176 44.3
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.3e-34 147.9 176 45.5
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 7.3e-34 147.9 183 42.6
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 7.3e-34 147.9 182 44.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.5e-34 147.5 194 45.9
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 9.5e-34 147.5 175 45.1
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 9.5e-34 147.5 179 45.3
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 9.5e-34 147.5 173 46.8
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.2e-33 147.1 175 46.3
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.2e-33 147.1 176 44.9
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.6e-33 146.7 181 46.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.8e-33 146.0 178 44.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.6e-33 145.6 185 43.2
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 4.7e-33 145.2 175 44.0
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.7e-33 145.2 178 44.4
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 6.2e-33 144.8 177 52.0
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 8.1e-33 144.4 187 44.9
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 8.1e-33 144.4 196 43.4
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.1e-32 144.1 174 59.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.1e-32 144.1 173 48.0
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.4e-32 143.7 178 49.4
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.8e-32 143.3 178 48.9
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 3.1e-32 142.5 181 42.0
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.0e-32 142.1 185 40.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 5.2e-32 141.7 188 45.7
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.8e-32 141.4 175 46.3
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.8e-32 141.4 189 44.4
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.2e-31 140.6 177 42.4
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-31 140.2 172 42.4
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.6e-31 139.4 176 41.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-31 139.0 175 45.7
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-31 139.0 175 44.0
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 5.8e-31 138.3 190 42.1
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 7.6e-31 137.9 171 43.3
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 9.9e-31 137.5 168 46.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.3e-30 137.1 164 45.1
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.3e-30 137.1 181 43.6
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.7e-30 136.7 175 42.3
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.7e-30 136.7 176 41.5
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 2.2e-30 136.3 172 56.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.4e-30 134.8 174 46.6
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 8.4e-30 134.4 170 49.4
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-29 134.0 174 42.5
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.4e-29 133.7 167 43.7
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-29 133.7 175 41.7
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.4e-29 133.7 175 41.7
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-29 133.7 175 41.7
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-29 133.7 178 43.3
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.4e-29 132.9 171 42.7
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 3.2e-29 132.5 172 42.4
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 7.1e-29 131.3 177 41.2
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 7.1e-29 131.3 173 42.8
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 7.1e-29 131.3 177 40.7
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-28 130.6 173 42.2
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.6e-28 130.2 176 39.8
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-28 129.8 173 43.9
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 2.1e-28 129.8 172 43.6
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.7e-28 129.4 172 43.0
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.7e-28 129.4 176 42.0
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 7.8e-28 127.9 176 41.5
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 7.8e-28 127.9 176 41.5
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 7.8e-28 127.9 172 41.9
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.0e-27 127.5 184 39.7
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-27 127.1 164 43.3
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.3e-27 127.1 165 58.8
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.7e-27 126.7 194 51.0
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.7e-27 126.7 179 44.1
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 3.0e-27 125.9 176 40.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 3.0e-27 125.9 176 40.9
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.0e-27 125.9 173 41.6
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.0e-27 125.9 184 39.1
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 3.9e-27 125.6 167 47.3
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 3.9e-27 125.6 177 41.8
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.9e-27 125.6 167 41.9
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 6.6e-27 124.8 179 42.5
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 8.7e-27 124.4 185 40.0
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.7e-27 124.4 185 40.0
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.7e-27 124.4 185 40.0
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-26 124.0 167 46.1
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.5e-26 123.6 179 38.0
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.5e-26 123.6 160 51.2
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 3.3e-26 122.5 167 42.5
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 5.6e-26 121.7 159 47.2
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 9.6e-26 120.9 162 42.6
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.2e-25 120.6 169 45.0
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.6e-25 120.2 212 39.6
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.6e-25 120.2 164 42.1
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.1e-25 119.8 167 46.7
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 3.6e-25 119.0 166 44.0
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-24 117.5 169 44.4
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-24 117.5 169 44.4
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-24 117.5 169 44.4
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-24 117.5 155 43.2
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.4e-24 117.1 177 41.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.4e-24 117.1 176 42.0
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 2.4e-24 116.3 173 41.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 2.4e-24 116.3 180 42.8
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.0e-24 115.5 112 52.7
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-24 115.5 173 39.9
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.2e-24 115.2 170 38.8
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 6.9e-24 114.8 165 41.8
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 9.0e-24 114.4 161 42.2
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-23 112.5 176 39.2
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.8e-23 111.7 158 47.5
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 9.9e-23 110.9 103 51.5
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.2e-22 109.8 174 38.5
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.2e-22 109.8 174 41.4
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 4.9e-22 108.6 174 37.9
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 9.3e-21 104.4 173 42.2
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-19 100.5 142 40.1
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 5.1e-19 98.6 106 50.9
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.5e-18 96.3 143 42.7
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.6e-17 92.4 159 35.2
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 3.6e-17 92.4 165 38.2
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-16 90.9 166 34.9
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.4e-16 90.5 159 34.6
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-16 89.4 159 42.8
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 4.5e-15 85.5 224 32.1
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-14 84.0 102 48.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-14 83.6 103 46.6
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.2e-14 83.2 115 44.3
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 4.9e-14 82.0 170 40.6
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.1e-13 80.9 198 29.8
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-13 79.7 101 44.6
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 3.2e-13 79.3 226 42.9
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 7.1e-13 78.2 171 47.4
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-12 77.4 85 49.4
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 3.5e-12 75.9 108 37.0
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 7.9e-12 74.7 68 55.9
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 1.0e-11 74.3 170 37.6
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.8e-11 73.6 203 31.0
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 5.1e-11 72.0 151 43.0
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 6.7e-11 71.6 168 36.9
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 2.1e-09 66.6 169 39.1
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.1e-09 66.6 133 54.1
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 2.8e-09 66.2 201 33.3
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-08 63.9 65 49.2
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.4e-08 63.2 197 27.4
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.3e-08 62.0 139 32.4
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.3e-06 57.4 191 26.7
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.7e-06 57.0 50 50.0
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.4e-06 55.1 50 58.0
Sed0004223 Sechium edule HOM05D001131 ORTHO05D000972 6.4e-06 55.1 175 26.3
MBI07_g42010_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 8.4e-06 54.7 196 25.5


User provided reference genes

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