Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015881.2 Cucumis melo HOM05D007464 ORTHO05D009388 1.2e-162 577.0 379 100.0
CsaV3_7G028410 Cucumis sativus L. HOM05D007464 ORTHO05D009388 4.1e-158 562.0 379 92.9
ClCG09G006650 Citrullus lanatus HOM05D007464 ORTHO05D009388 1.3e-151 540.4 379 92.1
QL12p023217 Quercus lobata HOM05D007464 ORTHO05D009388 9.6e-91 338.2 379 62.0
Prupe.8G249900 Prunus persica HOM05D007464 ORTHO05D009388 1.6e-90 337.4 382 56.8
Haze_04781 Corylus avellana HOM05D007464 ORTHO05D009388 1.1e-89 334.7 379 62.5
Manes.05G070400 Manihot esculenta HOM05D007464 ORTHO05D009388 6.8e-89 332.0 380 55.5
MD03G1273500 Malus domestica HOM05D007464 ORTHO05D009388 1.2e-88 331.3 382 55.8
CANSAT25G0135 Cannabis sativa HOM05D007464 ORTHO05D009388 2.2e-87 327.0 381 62.5
Gohir.D08G202800 Gossypium hirsutum HOM05D007464 ORTHO05D009388 1.1e-86 324.7 380 52.9
FAN15G0926 Fragaria x ananassa HOM05D007464 ORTHO05D009388 1.4e-86 324.3 381 62.7
Potri.002G213200 Populus trichocarpa HOM05D007464 ORTHO05D009388 1.4e-86 324.3 381 51.4
FAN20G1108 Fragaria x ananassa HOM05D007464 ORTHO05D009388 1.9e-86 323.9 381 61.7
Gorai.004G214200 Gossypium raimondii HOM05D007464 ORTHO05D009388 1.9e-86 323.9 380 52.9
Gohir.A08G184300 Gossypium hirsutum HOM05D007464 ORTHO05D009388 3.2e-86 323.2 380 52.4
Atru.chr5.1306 Acer truncatum HOM05D007464 ORTHO05D009388 7.1e-86 322.0 383 62.9
Cfa006067 Carpinus fangiana HOM05D007464 ORTHO05D009388 7.1e-86 322.0 379 61.7
FvH4_2g24420 Fragaria vesca HOM05D007464 ORTHO05D009388 7.1e-86 322.0 381 62.7
FAN24G2954 Fragaria x ananassa HOM05D007464 ORTHO05D009388 7.1e-86 322.0 381 62.7
Sabra14G0102300 Salix brachista HOM05D007464 ORTHO05D009388 9.3e-86 321.6 380 52.9
Duzib138G0973 Durio zibethinus HOM05D007464 ORTHO05D009388 1.2e-85 321.2 380 52.1
Duzib211G0172 Durio zibethinus HOM05D007464 ORTHO05D009388 1.2e-85 321.2 380 51.3
TWI59G0843 Tripterygium wilfordii HOM05D007464 ORTHO05D009388 6.0e-85 318.9 380 51.6
MD11G1296100 Malus domestica HOM05D007464 ORTHO05D009388 7.8e-85 318.5 382 53.1
FAN27G3498 Fragaria x ananassa HOM05D007464 ORTHO05D009388 1.7e-84 317.4 381 61.2
Duzib133G1000 Durio zibethinus HOM05D007464 ORTHO05D009388 1.9e-83 313.9 379 50.9
COL.COLO4_08053 Corchorus olitorius HOM05D007464 ORTHO05D009388 5.6e-83 312.4 381 52.8
RcHm_v2.0_Chr6g0292251 Rosa chinensis HOM05D007464 ORTHO05D009388 5.6e-83 312.4 381 61.4
Lsat_1_v5_gn_5_189900 Lactuca sativa HOM05D007464 ORTHO05D009388 3.6e-82 309.7 382 52.4
Thecc.01G287900 Theobroma cacao HOM05D007464 ORTHO05D009388 3.6e-82 309.7 380 48.2
Dinv32981 Davidia involucrata HOM05D007464 ORTHO05D009388 1.4e-81 307.8 382 49.0
CiPaw.07G097200 Carya illinoinensis HOM05D007464 ORTHO05D009388 3.4e-80 303.1 379 52.0
Solyc09g074290.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 2.2e-79 300.4 380 56.3
Solyc09g074280.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 1.1e-78 298.1 380 51.1
ECA248G1268 Erigeron canadensis HOM05D007464 ORTHO05D009388 3.2e-78 296.6 381 49.9
PGSC0003DMG400034780 Solanum tuberosum HOM05D007464 ORTHO05D009388 4.2e-78 296.2 380 56.3
PGSC0003DMG402003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 4.2e-78 296.2 380 56.3
Sopen09g029120 Solanum pennellii HOM05D007464 ORTHO05D009388 5.4e-78 295.8 380 56.1
TAR362G0634 Trochodendron aralioides HOM05D007464 ORTHO05D009388 5.4e-78 295.8 382 50.5
Sopen09g029110 Solanum pennellii HOM05D007464 ORTHO05D009388 9.3e-78 295.0 380 50.8
Nitab4.5_0008256g0020 Nicotiana tabacum HOM05D007464 ORTHO05D009388 2.1e-77 293.9 385 51.4
PGR119G1331 Punica granatum HOM05D007464 ORTHO05D009388 3.5e-77 293.1 380 48.9
Nitab4.5_0008984g0010 Nicotiana tabacum HOM05D007464 ORTHO05D009388 2.3e-76 290.4 385 55.6
Actinidia00714 Actinidia chinensis HOM05D007464 ORTHO05D009388 3.0e-76 290.0 381 52.5
CAN.G1466.5 Capsicum annuum HOM05D007464 ORTHO05D009388 3.9e-76 289.7 385 55.6
Cpa.g.sc9.143 Carica papaya HOM05D007464 ORTHO05D009388 1.9e-75 287.3 381 45.4
PGSC0003DMG401003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 1.9e-75 287.3 380 55.0
Hma1.2p1_1651F.1_g295790 Hydrangea macrophylla HOM05D007464 ORTHO05D009388 3.3e-75 286.6 383 49.6
Ciclev10019999m.g Citrus clementina HOM05D007464 ORTHO05D009388 7.3e-75 285.4 383 52.7
arahy.Tifrunner.gnm1.ann1.KRYP2Z Arachis hypogaea HOM05D007464 ORTHO05D009388 9.6e-75 285.0 381 44.1
arahy.Tifrunner.gnm1.ann1.TWB4J4 Arachis hypogaea HOM05D007464 ORTHO05D009388 2.1e-74 283.9 381 49.3
Lalb_Chr06g0163271 Lupinus albus HOM05D007464 ORTHO05D009388 2.1e-74 283.9 384 51.6
Nitab4.5_0001985g0030 Nicotiana tabacum HOM05D007464 ORTHO05D009388 2.1e-74 283.9 385 55.1
Medtr1g089180 Medicago truncatula HOM05D007464 ORTHO05D009388 1.4e-73 281.2 379 49.3
Psat6g168480 Pisum sativum HOM05D007464 ORTHO05D009388 3.1e-73 280.0 379 49.1
Ca_10384_v3 Cicer arietinum L. HOM05D007464 ORTHO05D009388 9.0e-73 278.5 381 56.2
DCAR_012440 Daucus carota HOM05D007464 ORTHO05D009388 3.4e-72 276.6 380 50.0
VMungo0720G1822 Vigna mungo HOM05D007464 ORTHO05D009388 5.8e-72 275.8 384 54.7
Hma1.2p1_0209F.1_g089270 Hydrangea macrophylla HOM05D007464 ORTHO05D009388 1.3e-71 274.6 384 51.8
Phvul.007G167500 Phaseolus vulgaris HOM05D007464 ORTHO05D009388 1.3e-71 274.6 384 51.0
Cc01_g20010 Coffea canephora HOM05D007464 ORTHO05D009388 2.2e-71 273.9 387 48.6
Peaxi162Scf00006g00365 Petunia axillaris HOM05D007464 ORTHO05D009388 1.4e-70 271.2 384 51.8
DCAR_002779 Daucus carota HOM05D007464 ORTHO05D009388 1.9e-70 270.8 380 49.2
Migut.D00243 Erythranthe guttata HOM05D007464 ORTHO05D009388 4.2e-70 269.6 390 52.1
Nn4g26088 Nelumbo nucifera HOM05D007464 ORTHO05D009388 5.4e-70 269.2 391 47.3
DCAR_018375 Daucus carota HOM05D007464 ORTHO05D009388 7.1e-70 268.9 380 48.9
DCAR_018376 Daucus carota HOM05D007464 ORTHO05D009388 7.1e-70 268.9 380 48.9
Lj5g0006511 Lotus japonicus HOM05D007464 ORTHO05D009388 1.1e-67 261.5 381 60.4
SalBow2G2643 Salvia bowleyana HOM05D007464 ORTHO05D009388 1.5e-67 261.2 382 45.8
arahy.Tifrunner.gnm1.ann1.9V8R16 Arachis hypogaea HOM05D007464 ORTHO05D009388 2.4e-65 253.8 390 49.0
Peaxi162Scf00006g00369 Petunia axillaris HOM05D007464 ORTHO05D009388 3.1e-65 253.4 350 55.4
Glyma.02G151200 Glycine max HOM05D007464 ORTHO05D009388 1.2e-64 251.5 386 44.6
HanXRQChr01g0002881 Helianthus annuus HOM05D007464 ORTHO05D009388 2.0e-64 250.8 381 46.7
ECA247G3730 Erigeron canadensis HOM05D007464 ORTHO05D009388 2.2e-63 247.3 381 44.4
Lsat_1_v5_gn_9_5000 Lactuca sativa HOM05D007464 ORTHO05D009388 1.4e-62 244.6 383 43.9
MBI19_g27178_MAGBIO Magnolia biondii HOM05D007464 ORTHO05D009388 4.2e-62 243.0 382 47.6
vmacro02528 Vaccinium macrocarpon HOM05D007464 ORTHO05D009388 2.1e-61 240.7 399 44.6
Aqoxy5G00591 Aquilegia oxysepala HOM05D007464 ORTHO05D009388 1.0e-60 238.4 356 51.1
Eucgr.H01612 Eucalyptus grandis HOM05D007464 ORTHO05D009388 1.0e-60 238.4 383 50.1
PSO832G1506 Papaver somniferum HOM05D007464 ORTHO05D009388 8.7e-60 235.3 384 49.2
PSO210G5947 Papaver somniferum HOM05D007464 ORTHO05D009388 2.1e-58 230.7 384 43.8
HanXRQChr10g0283061 Helianthus annuus HOM05D007464 ORTHO05D009388 9.0e-57 225.3 382 41.9
Nitab4.5_0001985g0010 Nicotiana tabacum HOM05D007464 ORTHO05D009388 4.6e-53 213.0 256 55.1
TPR.G16955 Trifolium pratense HOM05D007464 ORTHO05D009388 4.8e-50 203.0 378 35.7
CDE05G3330 Ceratophyllum demersum HOM05D007464 ORTHO05D009388 3.8e-47 193.4 384 38.8
Lj1C41G0 Lonicera japonica HOM05D007464 ORTHO05D009388 1.9e-46 191.0 293 46.1
arahy.Tifrunner.gnm1.ann1.6Q5HDN Arachis hypogaea HOM05D007464 ORTHO05D009388 1.7e-42 177.9 296 46.6
ATR0487G010 Amborella trichopoda HOM05D007464 ORTHO05D009388 1.6e-37 161.4 386 41.2
Rhsim13G0020100 Rhododendron simsii HOM05D007464 ORTHO05D009388 8.2e-34 149.1 369 39.3
HPP92_013668 Vanilla planifolia HOM05D007464 ORTHO05D009388 3.8e-31 140.2 287 34.8
CAN.G1466.4 Capsicum annuum HOM05D007464 ORTHO05D009388 6.1e-29 132.9 189 52.4
HPP92_006947 Vanilla planifolia HOM05D007464 ORTHO05D009388 2.0e-27 127.9 288 34.4
HPP92_011796 Vanilla planifolia HOM05D007464 ORTHO05D009388 1.1e-25 122.1 264 35.2
Oeu038991.1 Olea europaea HOM05D007464 ORTHO05D009388 3.6e-21 107.1 158 50.0
HPP92_013650 Vanilla planifolia HOM05D007464 ORTHO05D009388 1.4e-20 105.1 253 32.4
SEGI_03126 Sequoiadendron giganteum HOM05D006239 ORTHO05D009388 1.1e-17 95.5 195 36.9
RcHm_v2.0_Chr4g0395561 Rosa chinensis HOM05D007464 ORTHO05D009388 3.1e-17 94.0 97 49.5
SEGI_06606 Sequoiadendron giganteum HOM05D006239 ORTHO05D008159 1.6e-16 91.7 387 41.6
MBI15_g12399_MAGBIO Magnolia biondii HOM05D007663 ORTHO05D009455 1.5e-14 85.1 300 23.0
Dinv11280 Davidia involucrata HOM05D007464 ORTHO05D009388 5.5e-14 83.2 290 33.8
CANSAT56G3657 Cannabis sativa HOM05D007663 ORTHO05D009455 7.2e-14 82.8 293 24.2
AagrBONN_evm.TU.Sc2ySwM_362.193 Anthoceros agrestis HOM05D006239 ORTHO05D008159 9.4e-14 82.4 199 32.2
Nitab4.5_0000409g0130 Nicotiana tabacum HOM05D007663 ORTHO05D009455 1.0e-12 79.0 291 26.1
Mapoly0012s0013 Marchantia polymorpha HOM05D006239 ORTHO05D009455 4.0e-12 77.0 191 32.5
Nitab4.5_0001222g0010 Nicotiana tabacum HOM05D007663 ORTHO05D009455 8.8e-12 75.9 293 25.9
vmacro06952 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 1.5e-11 75.1 297 27.3
vmacro17693 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 1.5e-11 75.1 297 27.3
Migut.F00643 Erythranthe guttata HOM05D007663 ORTHO05D009455 3.4e-11 73.9 293 23.9
Thecc.10G011700 Theobroma cacao HOM05D007663 ORTHO05D009455 7.5e-11 72.8 291 25.4
Dinv21764 Davidia involucrata HOM05D007663 ORTHO05D009455 2.2e-10 71.2 294 23.5
Nn2g10961 Nelumbo nucifera HOM05D007663 ORTHO05D009455 2.8e-10 70.9 308 24.7
Rhsim03G0146000 Rhododendron simsii HOM05D007663 ORTHO05D009455 3.7e-10 70.5 298 25.5
HanXRQChr14g0459391 Helianthus annuus HOM05D007663 ORTHO05D009455 4.9e-10 70.1 297 24.9
Lj2g0011715 Lotus japonicus HOM05D006239 ORTHO05D008159 4.9e-10 70.1 432 31.2
CSS0001014 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 6.3e-10 69.7 310 26.1
CSS0017188 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 6.3e-10 69.7 310 26.1
DCAR_010462 Daucus carota HOM05D007663 ORTHO05D009455 6.3e-10 69.7 283 25.1
Peaxi162Scf00304g00013 Petunia axillaris HOM05D007663 ORTHO05D009455 6.3e-10 69.7 293 25.9
Cc02_g05740 Coffea canephora HOM05D007663 ORTHO05D009455 1.1e-09 68.9 293 23.2
Mapoly0060s0009 Marchantia polymorpha HOM05D006239 ORTHO05D008159 1.8e-09 68.2 199 29.6
SalBow3G1672 Salvia bowleyana HOM05D007663 ORTHO05D009455 1.8e-09 68.2 296 25.7
Actinidia33912 Actinidia chinensis HOM05D007663 ORTHO05D009455 2.4e-09 67.8 300 23.7
Lsat_1_v5_gn_2_124440 Lactuca sativa HOM05D007663 ORTHO05D009455 3.1e-09 67.4 294 23.5
Manes.07G134100 Manihot esculenta HOM05D007663 ORTHO05D009455 3.1e-09 67.4 287 23.7
Manes.11G152127 Manihot esculenta HOM05D007663 ORTHO05D009455 9.2e-09 65.9 378 32.5
Manes.11G152176 Manihot esculenta HOM05D007663 ORTHO05D009455 9.2e-09 65.9 385 34.5
ECA238G2021 Erigeron canadensis HOM05D007663 ORTHO05D009455 1.6e-08 65.1 288 21.5
Duzib128G1882 Durio zibethinus HOM05D007663 ORTHO05D009455 2.0e-08 64.7 303 24.4
Manes.11G152184 Manihot esculenta HOM05D007663 ORTHO05D009455 2.7e-08 64.3 287 23.3
Aqoxy2G00815 Aquilegia oxysepala HOM05D007663 ORTHO05D009455 3.5e-08 63.9 288 24.3
Nitab4.5_0001985g0020 Nicotiana tabacum HOM05D007464 ORTHO05D009388 1.0e-07 62.4 42 64.3
Sabra10G0142400 Salix brachista HOM05D007663 ORTHO05D009455 1.0e-07 62.4 277 26.4
CAN.G156.14 Capsicum annuum HOM05D007663 ORTHO05D009455 1.3e-07 62.0 299 24.1
AagrBONN_evm.TU.Sc2ySwM_117.3902 Anthoceros agrestis HOM05D006239 ORTHO05D008159 3.8e-07 60.5 187 28.3
Sopen03g025840 Solanum pennellii HOM05D007663 ORTHO05D009455 3.8e-07 60.5 285 25.3
LjContig00357g0015684 Lotus japonicus HOM05D007663 ORTHO05D009455 5.0e-07 60.1 294 25.9
Duzib128G1513 Durio zibethinus HOM05D006239 ORTHO05D008159 8.6e-07 59.3 403 31.5
Mapoly0059s0032 Marchantia polymorpha HOM05D006239 ORTHO05D009455 1.1e-06 58.9 146 28.1
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 1.5e-06 58.5 290 19.3
Atru.chr12.76 Acer truncatum HOM05D007663 ORTHO05D009455 1.9e-06 58.2 293 24.6
Ciclev10031427m.g Citrus clementina HOM05D007663 ORTHO05D009455 1.9e-06 58.2 291 22.3
FAN03G1333 Fragaria x ananassa HOM05D007663 ORTHO05D009455 2.5e-06 57.8 135 31.1
Solyc03g095860.3 Solanum lycopersicum HOM05D007663 ORTHO05D009455 3.3e-06 57.4 300 24.3
Ca_05987_v3 Cicer arietinum L. HOM05D007663 ORTHO05D009455 4.3e-06 57.0 299 25.1
FAN01G2334 Fragaria x ananassa HOM05D007663 ORTHO05D009455 4.3e-06 57.0 149 30.9
Manes.07G064632 Manihot esculenta HOM05D007663 ORTHO05D009455 9.5e-06 55.8 260 24.6
PGSC0003DMG400027722 Solanum tuberosum HOM05D007663 ORTHO05D009455 9.5e-06 55.8 300 23.7


User provided reference genes

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