Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 5.2e-110 401.0 190 100.0
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 2.7e-106 388.7 190 97.4
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 7.5e-101 370.5 190 92.6
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.8e-94 349.4 190 87.4
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 4.4e-85 318.2 190 77.4
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 2.9e-84 315.5 190 78.4
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.4e-83 313.2 178 81.5
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 7.0e-83 310.8 190 77.4
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 1.2e-82 310.1 180 81.7
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 1.6e-82 309.7 189 79.9
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 2.7e-82 308.9 172 83.1
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 7.8e-82 307.4 192 75.0
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 7.8e-82 307.4 212 70.3
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 1.7e-81 306.2 192 76.0
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.9e-81 305.1 186 75.3
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 8.6e-81 303.9 183 77.6
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 1.9e-80 302.8 182 75.8
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.9e-80 302.8 171 81.3
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.3e-80 302.0 186 74.7
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.3e-80 301.6 194 73.2
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 9.5e-80 300.4 174 77.0
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 1.6e-79 299.7 179 75.4
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 2.8e-79 298.9 177 77.4
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 6.2e-79 297.7 193 77.2
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.1e-78 297.0 179 75.4
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.1e-78 297.0 184 77.2
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.1e-78 297.0 182 75.8
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.1e-78 297.0 189 71.4
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 1.4e-78 296.6 177 76.8
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 3.1e-78 295.4 177 77.4
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 4.0e-78 295.0 183 74.9
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 4.0e-78 295.0 190 75.3
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 6.8e-78 294.3 188 73.9
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 6.8e-78 294.3 181 75.1
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 6.8e-78 294.3 184 70.1
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 6.8e-78 294.3 187 77.0
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 8.9e-78 293.9 164 79.9
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 1.5e-77 293.1 188 72.9
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 2.0e-77 292.7 193 75.1
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 2.0e-77 292.7 179 72.6
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 2.0e-77 292.7 179 72.6
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 4.4e-77 291.6 176 76.7
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 5.8e-77 291.2 183 74.9
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 1.7e-76 289.7 191 71.2
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 2.2e-76 289.3 181 75.1
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 2.2e-76 289.3 183 75.4
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 2.9e-76 288.9 181 70.7
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 3.7e-76 288.5 190 69.5
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 3.7e-76 288.5 162 80.2
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 6.4e-76 287.7 186 72.6
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 1.1e-75 287.0 188 75.5
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.4e-75 285.8 179 72.1
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 3.2e-75 285.4 186 72.6
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 4.1e-75 285.0 170 75.9
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 7.1e-75 284.3 171 76.0
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 9.2e-75 283.9 163 79.1
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.2e-74 283.5 178 71.9
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.2e-74 283.5 175 72.0
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.2e-74 283.5 161 76.4
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 4.6e-74 281.6 175 71.4
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 4.6e-74 281.6 189 70.4
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 7.8e-74 280.8 204 67.2
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 7.8e-74 280.8 163 77.3
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.0e-73 280.4 163 75.5
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.3e-73 279.3 176 72.7
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 2.3e-73 279.3 190 69.5
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 3.0e-73 278.9 178 73.6
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 3.9e-73 278.5 184 70.7
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 1.5e-72 276.6 165 77.0
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 3.3e-72 275.4 182 72.5
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 7.3e-72 274.2 187 70.6
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 9.5e-72 273.9 175 73.1
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 2.8e-71 272.3 185 70.3
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 2.8e-71 272.3 185 70.3
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 4.7e-71 271.6 186 71.0
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 1.1e-70 270.4 186 71.0
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 1.4e-70 270.0 185 69.7
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.8e-70 269.6 191 70.2
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.3e-70 269.2 175 69.1
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 5.2e-70 268.1 193 66.8
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 6.8e-70 267.7 163 75.5
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 6.8e-70 267.7 185 70.3
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 6.8e-70 267.7 170 71.8
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 1.2e-69 266.9 185 68.1
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.6e-69 265.8 224 60.3
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 3.4e-69 265.4 198 61.6
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 2.2e-68 262.7 187 67.4
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 2.2e-68 262.7 187 67.4
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 2.2e-68 262.7 187 67.4
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 3.7e-68 261.9 187 67.4
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 6.4e-68 261.2 187 67.4
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 3.2e-67 258.8 182 69.8
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 1.2e-66 256.9 187 66.3
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 1.6e-66 256.5 140 80.0
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.5e-64 250.0 164 66.5
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 1.5e-64 250.0 160 72.5
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.2e-63 246.9 160 70.0
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 1.6e-63 246.5 144 79.9
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 4.7e-63 245.0 190 63.7
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 4.7e-63 245.0 153 78.4
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 8.1e-63 244.2 190 64.7
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 2.4e-62 242.7 166 69.9
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 5.2e-62 241.5 152 78.9
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 4.9e-60 235.0 144 76.4
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 1.2e-58 230.3 272 47.4
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.6e-58 229.9 141 75.2
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 6.6e-57 224.6 233 52.8
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 8.7e-57 224.2 159 67.9
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 4.8e-55 218.4 191 53.9
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.8e-52 208.8 151 66.9
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 3.2e-51 205.7 137 73.7
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.6e-50 203.4 129 75.2
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 1.3e-49 200.3 170 55.3
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 6.6e-49 198.0 153 60.1
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 3.3e-48 195.7 165 54.5
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.6e-47 193.4 150 58.0
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 2.9e-44 182.6 122 68.0
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 8.4e-44 181.0 123 69.9
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.4e-43 180.3 105 75.2
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 2.4e-43 179.5 105 74.3
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 6.7e-41 171.4 113 69.9
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 8.7e-41 171.0 130 61.5
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 8.7e-41 171.0 109 78.0
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.4e-38 163.7 97 78.4
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 3.4e-37 159.1 91 75.8
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.3e-36 157.1 225 40.4
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 6.5e-36 154.8 117 63.2
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 5.5e-35 151.8 125 52.8
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 6.0e-34 148.3 91 70.3
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 1.9e-32 143.3 136 50.7
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 6.9e-30 134.8 85 69.4
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 2.3e-25 119.8 177 44.1
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 1.3e-23 114.0 82 68.3
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 2.6e-21 106.3 99 56.6
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 1.3e-20 104.0 182 37.9
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 6.5e-12 75.1 65 55.4


User provided reference genes

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