Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 6.9e-73 277.3 152 100.0
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.1e-59 233.4 152 87.5
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.4e-41 173.3 169 65.7
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 4.1e-41 171.8 150 60.0
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.7e-39 166.4 152 58.6
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 5.9e-24 114.8 154 48.7
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.9e-22 109.8 144 44.4
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 5.5e-22 108.2 147 39.5
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 7.2e-22 107.8 142 43.7
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 2.1e-21 106.3 153 45.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 6.1e-21 104.8 154 44.2
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.4e-20 103.6 146 41.8
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.4e-20 103.6 121 56.2
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.4e-20 103.6 152 43.4
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.4e-20 103.6 141 41.1
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 4.0e-20 102.1 155 42.6
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 8.8e-20 100.9 156 41.0
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 8.8e-20 100.9 145 43.4
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.2e-19 100.5 145 49.0
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.2e-19 100.5 145 49.0
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 2.6e-19 99.4 133 46.6
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.6e-19 99.4 152 48.0
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.4e-19 99.0 155 41.9
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.7e-18 96.7 158 49.4
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 2.8e-18 95.9 123 52.8
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.8e-18 95.9 148 39.2
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.7e-18 95.5 127 44.9
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 3.7e-18 95.5 153 49.7
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 6.3e-18 94.7 168 41.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 6.3e-18 94.7 166 41.6
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 8.3e-18 94.4 164 43.3
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.1e-17 94.0 176 41.5
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 1.1e-17 94.0 156 46.2
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.4e-17 93.6 150 40.0
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.8e-17 93.2 179 39.7
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.8e-17 93.2 129 47.3
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 3.1e-17 92.4 159 42.1
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.1e-17 92.4 149 43.6
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 5.4e-17 91.7 158 49.4
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.0e-17 91.3 164 42.7
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 7.0e-17 91.3 124 45.2
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.0e-17 91.3 125 51.2
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 9.2e-17 90.9 154 44.2
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 9.2e-17 90.9 124 49.2
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.6e-16 90.1 131 42.7
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.0e-16 89.7 153 37.9
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.7e-16 89.4 140 47.1
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.7e-16 89.4 162 40.1
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 3.5e-16 89.0 148 43.9
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.5e-16 89.0 117 49.6
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.5e-16 89.0 153 34.0
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 4.5e-16 88.6 140 45.0
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 5.9e-16 88.2 176 42.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.8e-16 87.8 117 49.6
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 7.8e-16 87.8 137 37.2
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.0e-15 87.4 176 34.7
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.3e-15 87.0 124 50.8
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.3e-15 87.0 137 48.9
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.3e-15 87.0 163 44.2
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.3e-15 87.0 155 41.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.3e-15 87.0 145 43.4
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.7e-15 86.7 140 45.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.3e-15 86.3 142 41.5
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.9e-15 85.9 143 45.5
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.9e-15 85.9 131 48.9
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 2.9e-15 85.9 166 42.8
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 3.8e-15 85.5 161 36.6
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 3.8e-15 85.5 143 37.8
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 5.0e-15 85.1 148 41.9
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.0e-15 85.1 54 63.0
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 5.0e-15 85.1 156 35.9
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 8.6e-15 84.3 143 42.7
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.1e-14 84.0 158 38.6
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.9e-14 83.2 153 39.9
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.5e-14 82.8 157 39.5
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 4.3e-14 82.0 54 61.1
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 4.3e-14 82.0 116 41.4
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 5.6e-14 81.6 119 47.1
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 7.3e-14 81.3 154 38.3
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 7.3e-14 81.3 147 36.1
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 9.5e-14 80.9 142 36.6
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.2e-13 80.5 54 55.6
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.2e-13 80.5 196 37.8
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.8e-13 79.3 180 32.8
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 3.6e-13 79.0 142 41.5
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 4.7e-13 78.6 54 59.3
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.7e-13 78.6 121 43.8
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 4.7e-13 78.6 135 45.9
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 6.1e-13 78.2 167 40.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.1e-13 78.2 54 59.3
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.0e-13 77.8 54 59.3
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.0e-13 77.8 54 59.3
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 8.0e-13 77.8 144 43.8
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.0e-12 77.4 55 56.4
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-12 77.0 54 57.4
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 4.0e-12 75.5 147 40.1
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.8e-12 74.7 155 39.4
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.6e-11 72.8 115 35.7
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 3.4e-11 72.4 55 50.9
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 5.7e-11 71.6 119 42.0
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 9.8e-11 70.9 55 50.9
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 9.8e-11 70.9 166 38.0
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 1.3e-10 70.5 55 50.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 1.3e-10 70.5 55 50.9
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.7e-10 70.1 55 50.9
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.7e-10 70.1 55 50.9
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 1.7e-10 70.1 52 51.9
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.7e-10 70.1 52 51.9
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 1.7e-10 70.1 52 51.9
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 1.7e-10 70.1 52 51.9
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.7e-10 70.1 55 50.9
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.7e-10 70.1 149 36.9
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.7e-10 70.1 149 36.9
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.7e-10 70.1 55 50.9
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.2e-10 69.7 117 42.7
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.9e-10 69.3 130 43.1
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.9e-10 69.3 117 42.7
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.7e-10 68.9 137 35.8
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 4.9e-10 68.6 55 49.1
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 4.9e-10 68.6 55 49.1
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 6.4e-10 68.2 52 48.1
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 6.4e-10 68.2 52 48.1
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 6.4e-10 68.2 52 48.1
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 6.4e-10 68.2 52 48.1
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 6.4e-10 68.2 62 53.2
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 6.4e-10 68.2 158 37.3
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 6.4e-10 68.2 125 32.8
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.4e-09 67.0 143 35.7
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 3.2e-09 65.9 164 37.2
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 3.2e-09 65.9 137 34.3
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 3.2e-09 65.9 137 34.3
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 3.2e-09 65.9 183 37.2
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 5.4e-09 65.1 119 41.2
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 5.4e-09 65.1 49 55.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 5.4e-09 65.1 51 51.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 7.0e-09 64.7 51 49.0
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 9.2e-09 64.3 158 34.8
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 9.2e-09 64.3 154 31.8
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.6e-08 63.5 141 31.9
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.0e-08 63.2 129 34.9
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.0e-08 63.2 124 34.7
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.5e-08 62.4 51 47.1
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 4.6e-08 62.0 121 42.1
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 5.9e-08 61.6 50 48.0
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 5.9e-08 61.6 51 47.1
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.0e-07 60.8 124 32.3
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.7e-07 60.1 52 46.2
Nn3g17864 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.3e-07 59.7 143 28.0
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 3.0e-07 59.3 46 54.3
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.9e-07 58.9 159 31.4
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 5.0e-07 58.5 141 29.8
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 2.5e-06 56.2 47 48.9
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.5e-06 56.2 48 41.7
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 3.3e-06 55.8 56 37.5
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 3.3e-06 55.8 56 37.5


User provided reference genes

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