Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.7e-272 941.4 479 100.0
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.7e-147 526.2 390 75.1
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.1e-145 520.8 390 74.4
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.6e-142 509.6 390 72.3
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.7e-107 393.3 433 56.4
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.5e-107 392.9 430 55.6
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.9e-107 391.7 403 58.3
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.9e-107 391.7 403 58.3
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.0e-106 391.3 393 58.0
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 6.7e-106 388.7 393 57.3
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 8.7e-106 388.3 403 58.1
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 5.7e-105 385.6 385 57.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 7.4e-105 385.2 392 57.7
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.4e-105 385.2 392 57.7
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.6e-104 384.0 401 58.4
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.8e-104 383.3 392 57.4
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.8e-103 380.6 391 58.1
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.3e-103 379.0 391 57.3
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.7e-101 374.0 403 56.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.9e-101 373.2 398 56.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.9e-100 370.5 394 56.6
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.9e-100 370.5 409 56.0
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.2e-100 369.4 391 56.3
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.1e-99 367.1 396 54.8
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.7e-99 366.7 357 59.7
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.9e-99 365.2 380 57.1
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.8e-98 364.0 380 56.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.8e-98 364.0 393 55.5
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 5.1e-98 362.5 411 53.8
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 6.7e-98 362.1 419 52.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.0e-97 360.5 343 60.1
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 5.7e-97 359.0 406 53.9
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 2.2e-96 357.1 416 54.3
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.2e-96 357.1 401 54.9
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.8e-96 356.7 393 55.5
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 6.3e-96 355.5 418 54.3
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.4e-95 354.4 423 52.5
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 3.1e-95 353.2 362 57.5
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 3.1e-95 353.2 421 51.8
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 5.3e-95 352.4 407 54.1
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.2e-94 351.3 343 59.5
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 5.9e-94 349.0 424 51.7
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.7e-93 347.4 389 55.8
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 5.0e-93 345.9 366 56.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 8.5e-93 345.1 405 53.1
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.4e-92 344.4 411 53.5
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.5e-92 343.6 394 53.8
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.5e-92 343.6 412 51.9
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.2e-92 343.2 401 52.1
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 4.2e-92 342.8 349 56.4
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 7.2e-92 342.0 407 52.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.1e-91 340.5 349 56.2
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.0e-90 338.2 343 57.4
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.3e-90 337.0 403 51.6
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 3.3e-89 333.2 404 53.2
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.2e-88 330.5 402 50.2
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.4e-87 327.8 371 54.2
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 5.3e-87 325.9 346 55.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.5e-86 323.2 346 56.6
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.3e-85 321.2 403 50.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.2e-84 316.2 406 49.8
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 8.0e-83 312.0 411 49.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 4.0e-82 309.7 390 49.5
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 6.7e-82 308.9 411 47.9
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 5.3e-79 299.3 414 48.1
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 7.0e-79 298.9 342 51.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 9.1e-79 298.5 398 49.2
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 3.5e-78 296.6 344 52.0
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 8.5e-77 292.0 376 48.1
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.1e-76 291.6 305 56.7
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.2e-75 288.1 438 45.4
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 8.0e-75 285.4 413 47.2
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.5e-73 281.2 344 51.2
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.4e-73 279.6 388 47.9
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 7.5e-73 278.9 344 50.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.5e-68 263.8 338 48.5
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.4e-68 261.9 402 45.3
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.3e-61 241.5 343 47.2
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 6.6e-61 239.2 343 46.9
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.2e-59 235.0 354 41.8
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.8e-55 221.1 260 52.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.4e-55 220.7 190 63.7
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.7e-51 206.5 190 61.1
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 3.5e-46 190.3 382 38.0
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-39 167.9 352 38.1
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.2e-38 165.2 414 33.6
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.7e-37 161.4 261 42.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.3e-36 156.0 329 35.9
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.8e-35 154.1 332 36.4
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.8e-34 149.4 327 36.1
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.6e-33 147.5 337 34.4
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.4e-33 147.1 329 35.9
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-31 141.7 341 34.9
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 7.1e-31 139.4 408 32.1
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-30 138.7 329 34.7
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-30 138.7 339 34.5
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-30 138.7 404 31.7
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-30 138.7 201 46.8
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 7.8e-30 136.0 337 33.2
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-29 135.6 317 36.9
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-29 134.0 373 32.4
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 6.6e-29 132.9 380 30.5
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 8.6e-29 132.5 369 32.5
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-28 131.7 317 36.0
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 5.6e-28 129.8 373 31.6
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.3e-28 129.4 356 32.6
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.2e-27 128.6 343 32.4
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-27 128.3 325 34.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-27 128.3 325 35.4
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.1e-27 127.9 330 32.1
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.1e-27 127.9 333 34.2
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.1e-26 125.6 405 31.1
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-25 122.1 367 32.7
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.2e-25 122.1 341 33.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.2e-25 122.1 322 32.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.5e-25 121.7 385 32.2
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.4e-25 120.6 331 34.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 5.8e-25 119.8 415 30.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 5.8e-25 119.8 415 30.4
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.8e-25 119.8 367 32.7
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 7.6e-25 119.4 391 30.7
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.4e-23 115.2 329 33.7
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-23 115.2 414 30.9
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.4e-23 114.4 389 30.8
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-22 111.7 241 35.7
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.8e-22 109.4 343 30.6
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 5.1e-21 106.7 352 28.1
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 9.6e-20 102.4 321 31.8
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.3e-18 96.7 310 31.6
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-17 95.1 328 31.4
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 2.6e-17 94.4 114 46.5
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 5.8e-17 93.2 117 50.4
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 9.9e-17 92.4 140 45.7
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.9e-15 88.2 306 30.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.2e-15 87.0 246 31.7
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 4.2e-15 87.0 64 65.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-14 85.5 203 35.0
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 7.9e-14 82.8 125 37.6
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.3e-12 77.4 111 44.1
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 4.8e-11 73.6 53 67.9
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.1e-10 70.9 55 69.1
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.0e-10 70.5 75 54.7
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-09 68.9 54 66.7
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-09 68.6 85 48.2
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 2.6e-09 67.8 56 58.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 4.5e-09 67.0 65 55.4
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.4e-07 62.0 160 33.1
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.9e-07 61.6 73 47.9
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.4e-07 61.2 175 32.0
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 3.2e-07 60.8 121 35.5
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 9.3e-07 59.3 56 58.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-06 58.5 94 45.7
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.6e-06 58.5 43 58.1
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.5e-06 57.4 57 54.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 6.0e-06 56.6 41 61.0
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 6.0e-06 56.6 81 44.4


User provided reference genes

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