Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.9e-241 837.4 427 100.0
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.5e-226 789.3 423 95.3
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.6e-223 777.7 401 98.3
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.8e-171 606.3 399 78.7
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 5.0e-169 598.2 406 78.3
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.4e-168 596.7 402 76.1
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 4.2e-168 595.1 399 76.2
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.2e-167 593.6 396 76.5
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 2.7e-167 592.4 420 73.6
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 7.9e-167 590.9 413 76.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 7.9e-167 590.9 401 76.1
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.9e-167 590.9 401 76.1
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.4e-166 590.1 412 75.0
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.4e-166 590.1 412 75.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-166 589.7 401 75.8
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 3.0e-166 589.0 412 75.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.5e-165 586.6 412 74.8
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.3e-165 585.1 400 75.8
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.6e-162 575.9 403 74.2
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 7.7e-162 574.3 415 73.0
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.7e-161 573.2 416 73.6
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.9e-161 572.4 402 73.1
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.5e-160 569.3 389 75.6
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.2e-160 568.9 389 75.6
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 4.2e-160 568.5 401 73.1
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 9.4e-160 567.4 402 73.6
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.4e-160 567.4 389 75.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.1e-159 564.7 407 72.5
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 6.1e-159 564.7 396 73.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 3.0e-158 562.4 390 73.8
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 5.1e-158 561.6 402 73.4
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 5.7e-157 558.1 405 71.1
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.8e-156 555.8 401 71.1
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.8e-155 553.1 400 73.2
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.1e-155 552.0 410 70.0
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.5e-154 550.1 406 70.0
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.0e-154 549.7 401 71.8
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.0e-153 547.4 426 70.9
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.7e-153 546.6 401 72.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 4.2e-152 542.0 395 70.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 7.2e-152 541.2 445 65.8
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 7.2e-152 541.2 402 70.6
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.6e-151 538.9 415 67.7
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 3.6e-151 538.9 406 70.0
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 6.7e-150 534.6 403 70.0
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 4.4e-149 531.9 402 70.4
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 9.7e-149 530.8 397 69.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.8e-148 529.3 416 66.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-147 527.3 415 66.7
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.8e-147 526.6 390 75.1
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.0e-146 523.1 412 68.0
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 1.7e-145 520.0 415 65.5
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 4.2e-144 515.4 396 68.7
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 5.5e-144 515.0 386 69.7
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-143 513.8 423 66.0
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 6.1e-143 511.5 388 69.1
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.0e-142 509.2 407 67.6
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.8e-139 500.0 404 65.1
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-138 496.5 409 63.8
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.7e-138 496.1 419 66.1
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 5.5e-136 488.4 425 61.4
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 3.6e-135 485.7 413 63.0
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 8.0e-135 484.6 401 63.8
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 6.8e-134 481.5 397 66.2
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 8.3e-132 474.6 407 63.1
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.1e-131 474.2 403 63.5
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 4.5e-130 468.8 402 61.7
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.9e-128 463.4 415 60.7
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.1e-127 458.4 398 62.6
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 8.9e-126 454.5 351 69.5
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 8.9e-126 454.5 458 56.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.3e-124 450.7 356 68.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 7.0e-123 444.9 410 59.0
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 4.5e-122 442.2 383 62.9
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 7.3e-120 434.9 383 61.6
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.8e-119 433.0 315 70.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.8e-119 433.0 443 57.3
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 8.3e-108 394.8 375 59.2
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-107 394.4 375 58.9
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.2e-100 370.2 373 52.8
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.5e-96 356.7 248 73.8
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.5e-93 347.4 390 53.3
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.8e-87 325.9 239 70.3
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 4.6e-82 309.3 407 47.7
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.1e-79 300.4 413 45.5
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.0e-78 296.2 281 60.1
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.8e-71 273.5 402 42.8
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 8.1e-71 271.9 407 42.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.1e-71 271.9 427 41.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.8e-69 265.8 415 43.1
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-68 264.6 394 42.4
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.4e-68 261.9 422 42.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 5.5e-67 259.2 408 41.4
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.1e-67 258.8 386 44.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.7e-66 256.9 410 42.4
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 2.3e-65 253.8 421 41.8
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.1e-64 251.5 405 40.2
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.5e-64 251.1 383 42.3
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.5e-64 250.4 408 41.9
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.7e-64 249.2 395 41.0
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.6e-63 247.7 400 41.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.5e-61 241.1 409 40.6
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.8e-61 239.2 375 42.1
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.2e-60 237.3 395 40.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.9e-60 236.9 400 39.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.2e-59 233.4 372 41.7
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 9.3e-59 231.9 393 39.2
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.1e-58 230.7 404 38.9
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.7e-58 230.3 393 39.2
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 6.1e-58 229.2 387 40.1
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 6.1e-58 229.2 410 38.3
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-57 228.0 406 38.9
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-57 228.0 387 39.8
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.3e-57 228.0 418 39.2
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 8.7e-57 225.3 392 39.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.1e-56 224.9 387 39.0
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-56 223.8 392 39.5
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 3.3e-56 223.4 405 40.0
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 5.7e-56 222.6 245 51.8
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 7.4e-56 222.2 397 38.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 3.7e-55 219.9 397 38.5
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-53 214.9 380 37.6
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.6e-53 213.8 383 37.9
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 2.9e-52 210.3 360 37.2
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.9e-52 210.3 371 36.9
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.4e-51 205.3 409 37.4
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-49 201.1 388 35.8
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-48 197.6 434 35.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-43 181.8 404 35.4
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.7e-41 172.6 259 42.1
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-40 171.4 270 39.6
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.7e-39 167.9 414 33.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 4.1e-38 163.3 400 31.2
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.2e-35 153.3 260 40.0
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 5.5e-35 152.9 109 66.1
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 4.7e-34 149.8 108 65.7
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 6.3e-31 139.4 189 48.1
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 8.2e-31 139.0 129 58.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 9.1e-30 135.6 82 80.5
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 4.5e-29 133.3 197 45.7
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-25 121.3 187 44.4
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.4e-24 117.1 109 58.7
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.7e-24 116.3 194 39.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 3.1e-22 110.5 167 37.7
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.7e-20 104.8 216 37.5
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.5e-20 102.4 151 43.0
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.1e-19 102.1 80 66.2
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 8.0e-18 95.9 65 64.6
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.3e-17 94.4 61 72.1
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.0e-16 91.3 131 44.3
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 2.0e-16 91.3 119 42.9
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 3.4e-16 90.5 307 29.0
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 3.4e-16 90.5 119 42.0
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 3.4e-16 90.5 60 70.0
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 3.7e-15 87.0 83 54.2
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-14 85.5 59 67.8
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 3.1e-14 84.0 111 50.5
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 7.0e-14 82.8 167 35.9
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 9.1e-14 82.4 73 61.6
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.6e-13 81.6 80 53.8
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 3.5e-13 80.5 46 80.4
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.5e-13 80.1 287 27.9
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 5.0e-12 76.6 106 42.5
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 6.6e-12 76.3 101 40.6
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 4.2e-11 73.6 125 36.0
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 4.2e-11 73.6 56 64.3
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.8e-10 70.9 83 47.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.8e-10 70.9 139 33.1
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 4.7e-10 70.1 85 49.4
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.0e-10 69.3 131 39.7
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.8e-09 68.2 159 34.6
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.3e-09 67.8 87 43.7
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 4.0e-09 67.0 61 55.7
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.8e-09 66.2 72 44.4
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 4.4e-08 63.5 60 51.7
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.9e-07 60.8 103 37.9


User provided reference genes

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