Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 9.0e-107 390.2 188 100.0
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.0e-94 350.1 188 89.9
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.9e-80 302.8 197 79.2
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 4.7e-39 165.2 203 55.7
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.3e-33 146.4 208 46.2
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 8.6e-33 144.4 208 45.2
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.1e-32 144.1 208 46.2
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.5e-32 143.7 199 47.2
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 9.5e-32 141.0 199 47.2
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.1e-31 139.8 209 47.4
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 2.8e-31 139.4 217 43.8
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.4e-30 137.1 206 45.6
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 3.1e-30 136.0 202 47.0
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.2e-29 134.0 206 45.1
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.2e-29 134.0 218 45.0
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.2e-29 134.0 211 42.7
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.5e-29 133.7 208 46.2
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.6e-29 132.9 206 44.7
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 3.4e-29 132.5 208 45.7
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 5.8e-29 131.7 216 43.1
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 9.9e-29 131.0 209 43.1
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 9.9e-29 131.0 211 43.6
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.3e-28 130.6 216 44.4
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.7e-28 130.2 200 45.0
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.2e-28 129.8 193 46.1
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.8e-28 129.0 212 42.0
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 6.4e-28 128.3 216 42.1
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 6.4e-28 128.3 211 43.1
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 8.4e-28 127.9 201 43.8
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-27 127.5 191 44.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.1e-27 127.5 219 42.5
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.4e-27 126.3 222 42.8
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.4e-27 126.3 221 41.6
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 3.2e-27 125.9 220 41.4
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.4e-27 125.2 214 43.9
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 7.1e-27 124.8 211 40.3
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 7.1e-27 124.8 196 43.9
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.6e-26 123.6 214 44.9
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 2.1e-26 123.2 231 41.6
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.6e-26 122.1 203 40.4
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 7.8e-26 121.3 225 42.2
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.3e-25 120.6 221 39.8
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.7e-25 120.2 215 42.8
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.3e-25 119.8 216 42.1
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.0e-25 119.4 187 43.3
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 3.9e-25 119.0 209 42.1
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.9e-25 119.0 203 39.9
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 3.9e-25 119.0 176 46.0
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.1e-25 118.6 117 60.7
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.1e-25 118.6 215 42.3
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 6.6e-25 118.2 209 42.1
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.5e-24 117.1 222 41.0
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.5e-24 117.1 210 40.0
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.9e-24 116.7 187 42.8
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.9e-24 116.7 222 40.1
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.5e-24 116.3 207 40.6
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.3e-24 115.9 215 40.5
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 4.3e-24 115.5 209 40.2
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 9.6e-24 114.4 216 41.7
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.2e-23 114.0 218 41.3
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.1e-23 113.2 123 53.7
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.1e-23 113.2 123 53.7
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.1e-23 113.2 204 40.7
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 3.6e-23 112.5 210 40.0
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 4.7e-23 112.1 212 38.7
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.7e-23 112.1 202 39.1
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 4.7e-23 112.1 143 51.0
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 6.2e-23 111.7 217 42.4
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 6.2e-23 111.7 162 47.5
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 8.1e-23 111.3 209 40.7
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.1e-23 111.3 203 37.9
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.4e-22 110.5 215 39.5
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.4e-22 110.5 204 38.2
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.8e-22 110.2 195 41.5
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.8e-22 110.2 204 38.7
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.8e-22 110.2 211 41.2
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.8e-22 110.2 215 39.5
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.4e-22 109.8 212 38.2
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 3.1e-22 109.4 222 38.7
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 3.1e-22 109.4 223 39.9
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.1e-22 109.4 189 41.8
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 4.0e-22 109.0 211 40.3
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 5.2e-22 108.6 210 36.2
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 5.2e-22 108.6 194 41.8
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.2e-22 108.6 202 40.1
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 9.0e-22 107.8 208 38.9
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 2.0e-21 106.7 180 39.4
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.0e-21 106.7 119 53.8
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.0e-21 106.7 201 38.8
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 4.4e-21 105.5 207 39.1
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 4.4e-21 105.5 222 39.2
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 7.6e-21 104.8 186 39.8
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 9.9e-21 104.4 214 41.1
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 9.9e-21 104.4 194 38.7
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 9.9e-21 104.4 194 38.7
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.3e-20 104.0 195 41.0
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.3e-20 104.0 209 37.3
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 2.2e-20 103.2 213 36.6
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.8e-20 102.4 180 42.2
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 4.9e-20 102.1 207 37.7
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 4.9e-20 102.1 125 50.4
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 6.4e-20 101.7 213 36.2
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 1.4e-19 100.5 214 36.0
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.9e-19 100.1 195 41.5
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.4e-19 99.8 187 40.1
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 3.2e-19 99.4 211 34.1
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 3.2e-19 99.4 148 45.9
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 4.2e-19 99.0 203 39.4
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 5.4e-19 98.6 95 58.9
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 7.1e-19 98.2 228 35.5
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 7.1e-19 98.2 147 46.3
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 7.1e-19 98.2 142 46.5
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 9.3e-19 97.8 210 39.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.2e-18 97.4 157 42.7
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.2e-18 97.4 154 43.5
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.2e-18 97.4 120 52.5
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.6e-18 97.1 188 39.9
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.7e-18 96.3 184 39.7
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.5e-18 95.9 197 37.6
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 3.5e-18 95.9 149 44.3
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.6e-18 95.5 113 51.3
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 7.8e-18 94.7 154 40.9
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 7.8e-18 94.7 92 59.8
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 1.0e-17 94.4 188 36.2
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.3e-17 93.2 95 53.7
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.3e-17 93.2 97 55.7
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.3e-17 93.2 97 55.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 3.9e-17 92.4 206 37.4
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 3.9e-17 92.4 188 35.6
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.9e-17 92.4 151 43.0
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 6.6e-17 91.7 199 35.2
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.6e-17 91.7 142 43.0
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.1e-16 90.9 146 43.8
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.5e-16 90.5 89 59.6
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 4.3e-16 89.0 138 44.2
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 9.6e-16 87.8 178 38.2
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 9.6e-16 87.8 140 41.4
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 6.2e-15 85.1 142 38.7
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 6.2e-15 85.1 163 40.5
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 8.1e-15 84.7 198 33.8
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.4e-14 84.0 158 39.2
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.4e-14 84.0 140 40.7
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 4.0e-14 82.4 120 48.3
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 6.9e-14 81.6 133 42.9
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.0e-13 80.1 87 52.9
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 2.6e-13 79.7 88 53.4
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.6e-13 79.7 119 48.7
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.4e-13 79.3 189 34.4
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 4.5e-13 79.0 93 49.5
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 2.2e-12 76.6 82 56.1
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.2e-12 76.6 82 56.1
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 3.8e-12 75.9 96 52.1
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.1e-10 70.1 92 50.0
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-09 67.4 83 49.4
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 2.3e-09 66.6 57 56.1
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.3e-07 60.8 49 61.2
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.6e-07 60.5 86 46.5
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.6e-07 60.5 97 45.4
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 6.2e-07 58.5 94 44.7


User provided reference genes

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