Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015806.2 Cucumis melo HOM05D000179 ORTHO05D000107 1.2e-136 490.3 343 100.0
CsaV3_7G027880 Cucumis sativus L. HOM05D000179 ORTHO05D000107 6.0e-117 424.9 337 84.0
ClCG09G007400 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.6e-101 373.6 339 67.3
Sed0017240 Sechium edule HOM05D000179 ORTHO05D000107 1.1e-83 314.3 332 58.1
Sed0000186 Sechium edule HOM05D000179 ORTHO05D000107 1.5e-75 287.3 337 58.8
CiPaw.08G109700 Carya illinoinensis HOM05D000179 ORTHO05D000107 3.7e-42 176.4 351 40.2
RcHm_v2.0_Chr6g0289921 Rosa chinensis HOM05D000179 ORTHO05D000107 3.6e-37 159.8 337 38.9
Ciclev10019959m.g Citrus clementina HOM05D000179 ORTHO05D000107 9.9e-35 151.8 346 39.6
Prupe.8G234800 Prunus persica HOM05D000179 ORTHO05D000107 1.7e-34 151.0 359 37.0
MD03G1258200 Malus domestica HOM05D000179 ORTHO05D000107 6.4e-34 149.1 350 39.4
Dinv22503 Davidia involucrata HOM05D000179 ORTHO05D000107 1.1e-33 148.3 346 39.3
FAN15G1122 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.1e-33 148.3 341 38.1
FvH4_2g22950 Fragaria vesca HOM05D000179 ORTHO05D000107 1.4e-33 147.9 341 38.1
MD11G1278800 Malus domestica HOM05D000179 ORTHO05D000107 1.9e-33 147.5 346 37.0
FAN24G3243 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.4e-33 147.1 341 37.8
Phvul.001G154800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 7.8e-32 142.1 348 37.6
CiPaw.07G086900 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.3e-31 141.4 357 35.6
FAN20G1262 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.3e-31 141.4 340 37.4
Nn1g02458 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.0e-31 140.2 343 34.7
Duzib138G1256 Durio zibethinus HOM05D000179 ORTHO05D000107 4.3e-30 136.3 338 36.1
FAN27G2274 Fragaria x ananassa HOM05D000179 ORTHO05D000107 7.3e-30 135.6 341 36.7
Glyma.19G159600 Glycine max HOM05D000179 ORTHO05D000107 9.6e-30 135.2 349 36.4
Atru.chr5.1520 Acer truncatum HOM05D000179 ORTHO05D000107 2.1e-29 134.0 350 43.7
VMungo1383G2029 Vigna mungo HOM05D000179 ORTHO05D000107 3.6e-29 133.3 347 36.6
Thecc.01G271700 Theobroma cacao HOM05D000179 ORTHO05D000107 4.7e-29 132.9 340 38.8
Duzib133G0638 Durio zibethinus HOM05D000179 ORTHO05D000107 8.1e-29 132.1 342 38.6
Potri.002G048000 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.8e-28 131.0 353 34.3
Gorai.008G002200 Gossypium raimondii HOM05D000179 ORTHO05D000107 3.1e-28 130.2 341 36.1
arahy.Tifrunner.gnm1.ann1.KA762Q Arachis hypogaea HOM05D000179 ORTHO05D000107 6.8e-28 129.0 365 32.9
CANSAT25G0389 Cannabis sativa HOM05D000179 ORTHO05D000107 6.8e-28 129.0 348 38.8
Dinv32885 Davidia involucrata HOM05D000179 ORTHO05D000107 6.8e-28 129.0 339 34.2
Potri.005G215100 Populus trichocarpa HOM05D000179 ORTHO05D000107 6.8e-28 129.0 353 34.0
Gohir.A12G002800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.5e-27 127.9 340 36.2
Duzib211G0150 Durio zibethinus HOM05D000179 ORTHO05D000107 2.0e-27 127.5 340 35.3
Manes.05G081800 Manihot esculenta HOM05D000179 ORTHO05D000107 3.4e-27 126.7 352 33.5
Lalb_Chr06g0162791 Lupinus albus HOM05D000179 ORTHO05D000107 5.8e-27 125.9 356 33.1
CSS0000745 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 7.6e-27 125.6 344 41.6
arahy.Tifrunner.gnm1.ann1.9KUV83 Arachis hypogaea HOM05D000179 ORTHO05D000107 1.3e-26 124.8 359 32.9
Gohir.D12G002500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.3e-26 124.8 340 35.6
Sabra02G0039200 Salix brachista HOM05D000179 ORTHO05D000107 3.8e-26 123.2 348 33.0
Gorai.007G139800 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.1e-25 121.7 343 34.7
Gohir.D11G130800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.4e-25 121.3 343 34.7
Sabra05G0164400 Salix brachista HOM05D000179 ORTHO05D000107 1.9e-25 120.9 349 32.4
QL12p042256 Quercus lobata HOM05D000179 ORTHO05D000107 5.4e-25 119.4 394 34.3
Glyma.03G157432 Glycine max HOM05D000179 ORTHO05D000107 7.1e-25 119.0 354 40.4
Gohir.A11G125500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.2e-24 118.2 343 34.1
Lalb_Chr21g0306341 Lupinus albus HOM05D000179 ORTHO05D000107 4.6e-24 116.3 347 33.1
Cfa006201 Carpinus fangiana HOM05D000179 ORTHO05D000107 6.0e-24 115.9 346 31.8
Manes.01G204100 Manihot esculenta HOM05D000179 ORTHO05D000107 6.0e-24 115.9 352 34.4
Glyma.02G144400 Glycine max HOM05D000179 ORTHO05D000107 1.0e-23 115.2 310 44.2
Cpa.g.sc52.117 Carica papaya HOM05D000179 ORTHO05D000107 5.1e-23 112.8 352 38.4
Phvul.007G174900 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.5e-22 111.3 341 31.7
TAR636G0240 Trochodendron aralioides HOM05D000179 ORTHO05D000107 3.3e-22 110.2 345 33.3
Actinidia24923 Actinidia chinensis HOM05D000179 ORTHO05D000107 7.3e-22 109.0 309 35.9
Eucgr.B01471 Eucalyptus grandis HOM05D000179 ORTHO05D000107 1.3e-21 108.2 291 36.1
VMungo0720G1299 Vigna mungo HOM05D000179 ORTHO05D000107 1.3e-21 108.2 343 36.4
TWI12G1078 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 6.2e-21 105.9 346 33.8
TAR365G0388 Trochodendron aralioides HOM05D000179 ORTHO05D000107 6.2e-21 105.9 345 31.6
Lj5g0021439 Lotus japonicus HOM05D000179 ORTHO05D000107 8.1e-21 105.5 349 32.7
Glyma.10G029700 Glycine max HOM05D000179 ORTHO05D000107 1.8e-20 104.4 355 38.3
Psat6g058520 Pisum sativum HOM05D000179 ORTHO05D000107 1.8e-20 104.4 340 32.6
TPR.G34885 Trifolium pratense HOM05D000179 ORTHO05D000107 1.8e-20 104.4 352 32.7
CSS0028952 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 5.3e-20 102.8 172 40.7
Hma1.2p1_0172F.1_g076010 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 5.3e-20 102.8 303 37.0
Actinidia21142 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.6e-19 100.5 282 35.8
Cc01_g19010 Coffea canephora HOM05D000179 ORTHO05D000107 7.6e-19 99.0 364 31.0
COL.COLO4_09188 Corchorus olitorius HOM05D000179 ORTHO05D000107 9.9e-19 98.6 349 32.7
Lsat_1_v5_gn_5_185501 Lactuca sativa HOM05D000179 ORTHO05D000107 2.9e-18 97.1 344 36.3
Peaxi162Scf00259g00513 Petunia axillaris HOM05D000179 ORTHO05D000107 3.8e-18 96.7 351 29.9
GSVIVG01003119001 Vitis vinifera HOM05D000179 ORTHO05D000107 3.8e-18 96.7 143 44.1
Gohir.A08G064000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.9e-17 94.4 336 29.5
HanXRQChr01g0005621 Helianthus annuus HOM05D000179 ORTHO05D000107 3.2e-17 93.6 358 31.0
Nn6g34168 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.2e-17 93.6 305 32.1
MSTRG.17462 Avicennia marina HOM05D000179 ORTHO05D000107 1.6e-16 91.3 337 29.4
Gorai.004G076800 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.1e-16 90.9 335 28.4
TWI18G1044 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.1e-16 90.9 299 31.8
Gohir.D08G072500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.5e-16 90.1 335 28.4
PGSC0003DMG400019342 Solanum tuberosum HOM05D000179 ORTHO05D000107 4.6e-16 89.7 284 32.0
Aqoxy2G03463 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 6.0e-16 89.4 353 28.0
Nitab4.5_0000459g0080 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.3e-15 87.4 371 30.2
Rhsim01G0272100 Rhododendron simsii HOM05D000179 ORTHO05D000064 1.1e-14 85.1 355 29.9
Solyc09g065670.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.1e-14 85.1 281 31.3
TAR633G1320 Trochodendron aralioides HOM05D000179 ORTHO05D000107 1.1e-14 85.1 334 31.7
Sopen09g027420 Solanum pennellii HOM05D000179 ORTHO05D000107 1.5e-14 84.7 281 31.7
Lj1g0012149 Lotus japonicus HOM05D000179 ORTHO05D000107 2.5e-14 84.0 285 30.5
CAN.G433.5 Capsicum annuum HOM05D000179 ORTHO05D000107 7.3e-14 82.4 370 29.5
Nitab4.5_0004115g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.3e-13 81.6 362 27.9
vmacro14888 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 2.1e-13 80.9 349 30.7
DCAR_012507 Daucus carota HOM05D000179 ORTHO05D000107 6.2e-13 79.3 279 33.7
Oeu025765.1 Olea europaea HOM05D000179 ORTHO05D000107 6.2e-13 79.3 303 32.0
Oeu014739.1 Olea europaea HOM05D000179 ORTHO05D000107 1.1e-12 78.6 143 39.9
DCAR_002702 Daucus carota HOM05D000179 ORTHO05D000107 5.3e-12 76.3 335 27.8
PSO339G5190 Papaver somniferum HOM05D000179 ORTHO05D000107 2.6e-11 73.9 335 29.6
PSO384G3854 Papaver somniferum HOM05D000179 ORTHO05D000107 2.2e-10 70.9 326 29.4
A02p24910 Brassica napus HOM05D000179 ORTHO05D000107 3.8e-10 70.1 308 26.6
BraA02t07481Z Brassica rapa HOM05D000179 ORTHO05D000107 3.8e-10 70.1 308 26.6
Sabra02G0039100 Salix brachista HOM05D000179 ORTHO05D000107 4.9e-10 69.7 126 37.3
Actinidia19961 Actinidia chinensis HOM05D000179 ORTHO05D000107 5.4e-09 66.2 348 33.3
ECA248G0822 Erigeron canadensis HOM05D000179 ORTHO05D000107 5.4e-09 66.2 336 28.6
Sc05g0001290 Simmondsia chinensis HOM05D000179 ORTHO05D000107 5.4e-09 66.2 301 33.6
Lj1A55G20 Lonicera japonica HOM05D000179 ORTHO05D000107 7.1e-09 65.9 182 33.0
AT4G02670 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 2.1e-08 64.3 120 40.0
BcaC03g16159 Brassica carinata HOM05D000179 ORTHO05D000107 3.5e-08 63.5 306 25.8
C02p39200 Brassica napus HOM05D000179 ORTHO05D000107 4.6e-08 63.2 306 26.1
BolC2t09932H Brassica oleracea HOM05D000179 ORTHO05D000107 4.6e-08 63.2 306 26.1
AUR62011972 Chenopodium quinoa HOM05D000179 ORTHO05D000107 4.6e-08 63.2 319 31.0
BcaB05g23653 Brassica carinata HOM05D000179 ORTHO05D000107 5.1e-07 59.7 129 39.5
CDE07G0798 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 6.7e-07 59.3 284 28.2
Lj2A1165G50 Lonicera japonica HOM05D000179 ORTHO05D000107 8.7e-07 58.9 278 33.1
RcHm_v2.0_Chr6g0289971 Rosa chinensis HOM05D000179 ORTHO05D000107 1.9e-06 57.8 30 93.3
Sp6g02590 Schrenkiella parvula HOM05D000179 ORTHO05D000107 1.9e-06 57.8 108 42.6
CDE06G1608 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 4.3e-06 56.6 283 27.2


User provided reference genes

Program Settings