Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 2.9e-137 491.9 244 100.0
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 5.2e-123 444.5 228 97.4
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 1.9e-117 426.0 221 95.0
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 9.9e-98 360.5 209 89.5
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 1.6e-71 273.5 206 68.9
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 1.0e-70 270.8 212 67.9
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 1.1e-69 267.3 210 67.1
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 2.0e-69 266.5 211 67.8
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 3.3e-69 265.8 206 66.5
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 9.7e-69 264.2 212 67.0
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 1.3e-68 263.8 216 65.3
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 1.4e-67 260.4 206 66.5
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 1.8e-67 260.0 215 65.1
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 7.0e-67 258.1 196 65.8
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 9.1e-67 257.7 197 67.5
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 1.2e-66 257.3 195 68.2
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 1.2e-66 257.3 222 61.7
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.2e-66 257.3 223 63.7
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 1.5e-66 256.9 192 68.8
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 1.5e-66 256.9 192 68.8
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 1.5e-66 256.9 206 65.5
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 2.0e-66 256.5 190 70.0
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 3.4e-66 255.8 206 65.5
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 4.5e-66 255.4 206 66.5
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 5.9e-66 255.0 225 62.2
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 1.0e-65 254.2 210 64.8
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 1.3e-65 253.8 215 62.8
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 1.7e-65 253.4 220 63.6
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 5.0e-65 251.9 204 63.2
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 5.0e-65 251.9 190 67.4
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 6.5e-65 251.5 190 68.9
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 6.5e-65 251.5 202 67.3
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 1.1e-64 250.8 190 67.9
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 1.4e-64 250.4 204 65.7
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 1.9e-64 250.0 200 66.5
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 3.2e-64 249.2 200 65.5
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 5.5e-64 248.4 205 64.9
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 7.2e-64 248.1 190 67.4
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 9.4e-64 247.7 205 64.4
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 1.6e-63 246.9 190 67.4
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 1.6e-63 246.9 205 64.4
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 2.1e-63 246.5 208 62.5
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 1.4e-62 243.8 195 64.1
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 8.8e-62 241.1 212 59.0
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 2.6e-61 239.6 211 61.1
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 4.4e-61 238.8 201 63.7
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 9.7e-61 237.7 210 61.0
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 4.8e-60 235.3 187 64.2
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 1.4e-59 233.8 200 61.5
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 2.4e-59 233.0 193 62.2
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 3.1e-59 232.6 214 60.7
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 4.1e-59 232.3 209 61.2
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 4.1e-59 232.3 207 60.9
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 5.3e-59 231.9 200 61.0
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 9.1e-59 231.1 217 59.4
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 1.6e-58 230.3 198 62.1
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 2.6e-58 229.6 189 61.9
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 2.6e-58 229.6 216 58.3
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 7.7e-58 228.0 206 60.2
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 1.0e-57 227.6 189 61.4
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 2.2e-57 226.5 182 64.3
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 2.9e-57 226.1 187 61.0
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 6.5e-57 224.9 233 54.5
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 1.9e-56 223.4 203 57.6
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 1.9e-56 223.4 193 62.2
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 4.2e-56 222.2 201 61.7
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 5.5e-56 221.9 201 59.2
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 1.4e-54 217.2 207 59.9
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 3.0e-54 216.1 174 63.8
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 4.0e-54 215.7 199 58.8
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 2.0e-53 213.4 190 60.0
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 2.6e-53 213.0 258 48.8
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 4.4e-53 212.2 211 57.3
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 1.1e-51 207.6 207 57.0
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 1.4e-51 207.2 148 71.6
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 2.4e-51 206.5 187 58.8
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 2.4e-51 206.5 144 71.5
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 3.1e-51 206.1 207 56.0
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 3.1e-51 206.1 210 51.4
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 9.1e-51 204.5 242 52.1
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 7.7e-50 201.4 148 68.9
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 2.2e-49 199.9 150 66.7
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 2.9e-49 199.5 201 57.7
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.9e-49 199.5 243 52.3
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 2.9e-49 199.5 208 57.7
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 2.5e-48 196.4 148 68.2
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 9.4e-48 194.5 167 61.1
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.2e-47 194.1 218 47.2
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 5.4e-43 178.7 122 64.8
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 2.0e-42 176.8 139 64.0
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 1.2e-39 167.5 140 54.3
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 1.2e-39 167.5 197 47.2
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 1.2e-39 167.5 282 39.0
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 6.1e-39 165.2 131 64.9
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 2.0e-37 160.2 275 38.9
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 4.9e-36 155.6 132 59.1
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 1.1e-35 154.5 161 52.8
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 2.7e-34 149.8 124 65.3
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 1.3e-33 147.5 122 66.4
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 1.2e-31 141.0 163 50.3
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 1.0e-30 137.9 100 73.0
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 3.7e-28 129.4 110 60.9
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 7.3e-24 115.2 102 61.8
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 2.1e-23 113.6 208 39.9
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 6.4e-20 102.1 88 55.7
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 1.2e-18 97.8 109 40.4
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 6.0e-18 95.5 80 60.0
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 7.8e-18 95.1 75 65.3
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 8.6e-17 91.7 61 68.9
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 1.9e-11 73.9 107 41.1
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 3.2e-11 73.2 80 50.0
PSO675G0625 Papaver somniferum HOM05D002397 ORTHO05D002667 1.9e-08 63.9 143 27.3
PSO017G1677 Papaver somniferum HOM05D002397 ORTHO05D002667 2.5e-08 63.5 143 27.3
Hund18476 Selenicereus undatus HOM05D007131 ORTHO05D009026 2.1e-07 60.5 131 35.9
Cre06.g273000 Chlamydomonas reinhardtii HOM05D002397 ORTHO05D002667 3.6e-07 59.7 101 32.7
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 1.4e-06 57.8 105 30.5
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 1.8e-06 57.4 104 29.8
PGR004G1811 Punica granatum HOM05D002397 ORTHO05D002667 1.8e-06 57.4 147 26.5
SEGI_32624 Sequoiadendron giganteum HOM05D002397 ORTHO05D002667 1.8e-06 57.4 104 28.8
Mapoly0066s0117 Marchantia polymorpha HOM05D002397 ORTHO05D002667 2.4e-06 57.0 161 26.7
Oeu034906.1 Olea europaea HOM05D002397 ORTHO05D002667 3.1e-06 56.6 158 27.2
ATR0307G077 Amborella trichopoda HOM05D002397 ORTHO05D002667 5.2e-06 55.8 157 26.1
EL10Ac3g07388 Beta vulgaris HOM05D002397 ORTHO05D002667 5.2e-06 55.8 157 23.6
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 5.2e-06 55.8 104 28.8
PGR142G3425 Punica granatum HOM05D002397 ORTHO05D002667 5.2e-06 55.8 111 28.8
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 6.8e-06 55.5 117 27.4
Glyma.15G161000 Glycine max HOM05D002397 ORTHO05D002667 6.8e-06 55.5 137 25.5
Gohir.A13G001100 Gossypium hirsutum HOM05D002397 ORTHO05D002667 6.8e-06 55.5 105 30.5
SGA_v2.0_scaffold66G22344 Striga asiatica HOM05D002397 ORTHO05D002667 6.8e-06 55.5 161 25.5
CSS0046926 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 8.9e-06 55.1 138 26.1
TPR.G38253 Trifolium pratense HOM05D002397 ORTHO05D002667 8.9e-06 55.1 104 26.9


User provided reference genes

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