Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 1.1e-167 593.2 294 100.0
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 2.8e-139 498.8 271 94.5
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 5.5e-135 484.6 277 89.2
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 1.8e-109 399.8 266 78.9
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 1.2e-81 307.4 268 60.8
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 5.1e-80 302.0 280 58.6
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 1.8e-77 293.5 256 62.9
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 6.8e-77 291.6 269 60.2
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 4.4e-76 288.9 206 70.4
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 1.7e-75 287.0 246 62.2
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 6.4e-75 285.0 273 56.0
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 1.1e-74 284.3 210 67.6
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 1.1e-74 284.3 292 53.1
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 2.4e-74 283.1 206 67.5
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 2.4e-74 283.1 226 65.0
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 5.4e-74 282.0 277 56.7
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 3.5e-73 279.3 204 69.1
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 4.6e-73 278.9 273 54.2
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 6.0e-73 278.5 215 65.1
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 1.7e-72 276.9 267 55.1
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 1.7e-72 276.9 297 50.5
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 3.0e-72 276.2 297 50.5
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 3.0e-72 276.2 286 55.6
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 3.9e-72 275.8 219 63.9
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 5.1e-72 275.4 230 62.6
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 5.1e-72 275.4 204 69.6
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 6.6e-72 275.0 259 57.5
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 8.6e-72 274.6 217 63.6
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 3.3e-71 272.7 209 65.6
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 4.3e-71 272.3 189 69.3
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 4.3e-71 272.3 229 60.7
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 5.6e-71 271.9 210 65.2
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 7.3e-71 271.6 189 69.3
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 7.3e-71 271.6 213 66.2
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 7.3e-71 271.6 272 56.6
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 9.6e-71 271.2 189 69.3
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 9.6e-71 271.2 189 69.3
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 1.2e-70 270.8 190 68.9
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 1.2e-70 270.8 189 68.8
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 1.2e-70 270.8 201 67.2
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 2.8e-70 269.6 189 69.8
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 2.8e-70 269.6 206 65.5
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 2.8e-70 269.6 206 68.4
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 3.6e-70 269.2 215 65.1
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 1.1e-69 267.7 206 63.1
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 1.4e-69 267.3 227 60.8
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 1.8e-69 266.9 259 54.8
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 1.8e-69 266.9 220 61.8
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 3.1e-69 266.2 203 67.0
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 5.2e-69 265.4 276 53.3
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 1.2e-68 264.2 220 61.4
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 2.0e-68 263.5 220 60.9
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 4.4e-68 262.3 266 53.0
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 5.8e-68 261.9 272 52.9
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 9.9e-68 261.2 244 56.6
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 9.9e-68 261.2 202 65.3
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.3e-67 260.8 297 48.5
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 2.2e-67 260.0 188 68.1
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 6.4e-67 258.5 194 66.0
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 1.1e-66 257.7 231 57.1
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 1.9e-66 256.9 201 64.2
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 4.2e-66 255.8 189 66.1
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 4.2e-66 255.8 234 56.8
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 7.1e-66 255.0 202 62.9
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 9.3e-66 254.6 227 57.3
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 1.2e-65 254.2 189 66.1
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 1.6e-65 253.8 208 60.1
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 2.1e-65 253.4 201 63.2
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 3.5e-65 252.7 253 53.4
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 3.5e-65 252.7 203 62.1
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 4.6e-65 252.3 201 62.7
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 7.8e-65 251.5 204 62.3
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 1.0e-64 251.1 266 54.1
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 3.0e-64 249.6 290 48.6
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 5.1e-64 248.8 220 57.3
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 6.6e-64 248.4 193 60.6
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.1e-63 247.7 208 60.6
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 1.5e-63 247.3 215 58.6
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 7.3e-63 245.0 296 49.3
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 2.8e-62 243.0 207 59.9
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 4.8e-62 242.3 199 60.3
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 6.2e-62 241.9 208 59.1
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 4.0e-61 239.2 227 55.5
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 4.9e-59 232.3 224 54.5
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 2.4e-58 229.9 233 51.5
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 9.3e-58 228.0 176 61.9
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 4.6e-57 225.7 188 61.2
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 1.1e-55 221.1 167 64.7
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 1.3e-54 217.6 193 54.4
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.8e-53 213.8 190 56.8
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 6.9e-53 211.8 187 60.4
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 1.2e-52 211.1 194 57.2
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 2.7e-49 199.9 158 62.7
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 2.5e-47 193.4 159 60.4
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 1.6e-46 190.7 195 49.7
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 4.8e-46 189.1 145 58.6
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 3.4e-44 183.0 141 62.4
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 4.9e-43 179.1 190 47.4
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 2.5e-42 176.8 195 45.6
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 3.0e-40 169.9 141 60.3
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 5.7e-39 165.6 189 46.6
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 7.4e-39 165.2 210 49.0
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 9.6e-39 164.9 151 57.6
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.4e-37 160.2 206 47.6
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 7.2e-34 148.7 201 43.3
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 6.1e-33 145.6 139 54.0
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.2e-28 131.3 95 61.1
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.6e-28 130.2 207 40.6
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 5.9e-28 129.0 146 50.0
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 1.6e-25 120.9 149 49.0
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 1.3e-22 111.3 84 66.7
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 2.8e-22 110.2 158 40.5
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 1.8e-21 107.5 196 35.7
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 7.9e-17 92.0 103 46.6
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 1.8e-13 80.9 50 82.0
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 6.1e-09 65.9 70 48.6
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 6.1e-09 65.9 123 40.7


User provided reference genes

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