Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 3.0e-194 681.8 374 100.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 3.7e-192 674.9 374 98.7
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.0e-187 657.5 374 96.0
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 6.3e-176 620.9 368 91.3
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.5e-166 589.7 369 87.8
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 6.7e-154 547.7 365 82.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.5e-148 530.0 366 78.4
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.5e-148 529.3 369 78.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 9.4e-148 527.3 369 77.5
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.2e-147 526.9 369 78.3
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.4e-146 523.5 367 78.2
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-146 523.1 364 78.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.7e-146 521.2 364 78.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.6e-145 519.2 363 79.1
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.0e-142 509.6 363 76.6
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.5e-142 508.8 366 75.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 4.5e-142 508.4 370 75.7
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 5.9e-142 508.1 369 76.4
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 2.9e-141 505.8 333 83.2
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 7.2e-140 501.1 339 81.4
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 9.4e-140 500.7 380 72.9
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.1e-139 499.6 371 75.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.7e-139 499.2 369 75.9
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 4.7e-139 498.4 357 76.8
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 4.7e-139 498.4 369 75.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 6.1e-139 498.0 349 77.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 5.2e-138 495.0 364 75.3
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 6.8e-138 494.6 348 77.9
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 2.6e-137 492.7 377 73.5
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.8e-137 490.7 353 74.8
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.4e-135 486.9 371 73.6
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-135 486.5 340 78.5
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 2.4e-135 486.1 341 78.0
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 3.1e-135 485.7 367 72.8
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 5.4e-135 485.0 369 74.5
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-134 483.8 341 79.2
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.2e-134 483.8 363 72.7
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.7e-134 482.6 341 78.0
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 3.5e-134 482.3 348 76.1
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.3e-133 479.6 381 72.2
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.3e-133 479.6 351 75.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.9e-133 479.2 374 72.5
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 2.9e-133 479.2 374 72.5
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 6.6e-133 478.0 374 72.2
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.1e-132 477.2 328 76.5
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 5.5e-132 474.9 321 81.0
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 5.5e-132 474.9 373 70.8
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 7.2e-132 474.6 322 78.9
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 9.5e-132 474.2 345 77.4
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.2e-131 473.8 371 70.6
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.2e-131 473.8 337 77.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.6e-131 473.4 347 76.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.6e-131 473.4 342 77.2
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.1e-131 473.0 372 71.8
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.8e-131 472.6 332 79.5
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 2.8e-131 472.6 371 72.0
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-131 472.2 373 71.6
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 3.6e-131 472.2 339 75.5
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 4.7e-131 471.9 345 75.1
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.8e-130 469.9 369 71.5
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.3e-130 469.5 372 71.8
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.3e-130 469.5 365 72.3
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.0e-130 469.2 371 72.0
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 4.0e-130 468.8 370 72.2
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 4.0e-130 468.8 363 73.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 5.2e-130 468.4 335 77.9
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 8.9e-130 467.6 363 73.3
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.2e-129 467.2 371 71.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.5e-129 466.8 339 75.2
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.6e-129 466.1 372 71.5
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 2.6e-129 466.1 376 71.5
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.6e-129 466.1 371 71.2
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.6e-129 466.1 372 71.2
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 2.6e-129 466.1 330 76.7
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 5.7e-129 464.9 371 70.9
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 7.5e-129 464.5 363 73.3
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 7.5e-129 464.5 371 71.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 9.8e-129 464.2 371 71.4
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 9.8e-129 464.2 339 75.5
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 9.8e-129 464.2 339 75.5
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 9.8e-129 464.2 371 71.4
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-128 463.8 371 71.4
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.3e-128 463.8 371 71.4
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.3e-128 463.8 335 75.8
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-128 463.0 366 71.6
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 3.7e-128 462.2 357 72.5
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 3.7e-128 462.2 344 74.7
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 3.7e-128 462.2 344 74.7
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 8.3e-128 461.1 372 68.5
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 3.1e-127 459.1 326 76.1
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.1e-127 458.8 357 72.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 4.1e-127 458.8 361 70.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 4.1e-127 458.8 342 73.4
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 5.4e-127 458.4 375 70.1
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.2e-126 457.2 350 73.1
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.0e-126 456.4 368 70.9
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.7e-126 456.1 372 69.9
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 4.5e-126 455.3 374 70.1
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 3.8e-125 452.2 343 73.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 5.0e-125 451.8 327 75.2
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 8.6e-125 451.1 370 69.7
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 8.6e-125 451.1 355 73.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.9e-124 449.9 370 68.9
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 9.5e-124 447.6 344 70.9
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.0e-122 442.2 371 68.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 4.0e-122 442.2 334 73.7
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 8.9e-122 441.0 341 70.7
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.7e-120 436.8 369 62.6
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.4e-120 434.9 363 67.2
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 6.4e-120 434.9 364 67.6
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.4e-119 431.8 363 66.7
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 5.6e-116 421.8 350 67.1
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.2e-112 409.8 365 63.8
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.4e-111 406.4 368 60.9
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.4e-111 406.4 336 69.0
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.2e-110 404.1 361 64.3
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 9.9e-105 384.4 312 72.4
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 6.4e-104 381.7 367 63.5
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.1e-100 370.9 369 62.3
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 6.2e-99 365.2 300 71.0
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 6.2e-99 365.2 354 59.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.1e-99 364.8 338 61.8
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.6e-97 359.8 336 60.1
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.9e-93 345.9 350 58.9
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.1e-91 340.1 247 76.1
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 4.7e-91 339.0 245 75.9
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.2e-89 334.3 373 53.4
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.5e-89 334.0 204 80.4
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.7e-88 330.5 293 67.6
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.7e-88 330.5 318 60.1
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.3e-82 308.9 297 56.9
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.1e-78 297.0 345 53.9
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 7.9e-78 295.0 327 56.0
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.7e-77 291.6 322 54.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.3e-68 262.7 232 60.8
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.6e-59 234.2 208 62.0
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.4e-50 203.8 208 53.4
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 5.5e-47 192.6 129 76.7
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.1e-42 176.8 164 56.7
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 5.9e-41 172.6 142 63.4
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 3.3e-36 156.8 164 56.1
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 2.2e-35 154.1 100 76.0
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.5e-33 146.4 92 75.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 2.9e-32 143.7 95 75.8
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 6.8e-29 132.5 94 69.1
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 6.3e-27 125.9 128 53.9
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 5.0e-24 116.3 78 73.1
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 8.5e-24 115.5 123 51.2
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.5e-23 114.0 95 55.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 5.5e-23 112.8 130 50.0
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-21 107.5 107 54.2
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 4.1e-18 96.7 283 30.4
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-17 94.4 94 52.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-17 94.4 66 71.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.8e-13 81.3 316 29.7
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.5e-12 78.2 184 33.7
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.7e-11 73.6 52 67.3
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 6.3e-11 72.8 61 68.9
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 8.3e-11 72.4 59 62.7
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.1e-10 70.1 57 57.9
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.0e-09 67.8 52 61.5
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.7e-09 67.4 44 72.7
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-09 67.4 52 63.5
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.5e-09 66.6 57 56.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 76 50.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 76 50.0
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-08 64.3 49 59.2
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.3e-08 64.3 163 33.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.6e-08 62.4 47 59.6
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.6e-08 62.4 52 57.7
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 2.1e-06 57.8 37 75.7
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 6.1e-06 56.2 37 73.0


User provided reference genes

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