Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015697.2 Cucumis melo HOM05D008002 ORTHO05D010148 4.4e-115 417.9 204 100.0
CsaV3_7G002100 Cucumis sativus L. HOM05D008002 ORTHO05D010148 8.3e-106 387.1 204 92.6
Sed0014792 Sechium edule HOM05D008002 ORTHO05D010148 1.5e-78 296.6 206 75.2
ClCG02G003270 Citrullus lanatus HOM05D008002 ORTHO05D010148 6.4e-66 254.6 204 67.2
Thecc.02G147800 Theobroma cacao HOM05D008002 ORTHO05D010148 7.6e-59 231.1 217 57.6
Gohir.D02G193300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 6.4e-58 228.0 215 56.3
Gorai.012G138300 Gossypium raimondii HOM05D008002 ORTHO05D010148 8.4e-58 227.6 216 54.6
Gohir.A04G111300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 5.5e-57 224.9 216 53.7
Gohir.D04G151600 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.2e-56 223.8 216 53.7
Gorai.005G216100 Gossypium raimondii HOM05D008002 ORTHO05D010148 2.1e-56 223.0 216 55.1
Gohir.A03G170200 Gossypium hirsutum HOM05D008002 ORTHO05D010148 3.5e-56 222.2 216 54.6
Duzib132G1147 Durio zibethinus HOM05D008002 ORTHO05D010148 1.0e-55 220.7 220 54.1
QL11p056798 Quercus lobata HOM05D000114 ORTHO05D009898 2.3e-55 219.5 231 52.4
Duzib248G0441 Durio zibethinus HOM05D008002 ORTHO05D010148 3.9e-55 218.8 216 51.9
TAR376G1088 Trochodendron aralioides HOM05D008002 ORTHO05D010148 8.7e-55 217.6 203 58.6
Hund00100 Selenicereus undatus HOM05D008002 ORTHO05D010148 7.4e-54 214.5 207 57.5
CiPaw.05G094700 Carya illinoinensis HOM05D008002 ORTHO05D010148 6.2e-53 211.5 159 64.2
GSVIVG01023858001 Vitis vinifera HOM05D008002 ORTHO05D010148 1.1e-52 210.7 185 57.8
FAN27G2383 Fragaria x ananassa HOM05D008002 ORTHO05D010148 4.5e-51 205.3 215 53.0
FvH4_2g17020 Fragaria vesca HOM05D008002 ORTHO05D010148 7.6e-51 204.5 215 52.6
CANSAT25G0111 Cannabis sativa HOM05D008002 ORTHO05D010148 1.0e-50 204.1 206 53.4
Rhsim11G0198500 Rhododendron simsii HOM05D008002 ORTHO05D010148 4.9e-50 201.8 161 60.2
FAN15G1289 Fragaria x ananassa HOM05D008002 ORTHO05D010148 6.5e-50 201.4 215 51.6
FAN24G1487 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.1e-49 200.7 212 52.4
MD05G1143100 Malus domestica HOM05D008002 ORTHO05D010148 1.9e-49 199.9 213 53.5
Prupe.8G181900 Prunus persica HOM05D008002 ORTHO05D010148 2.5e-49 199.5 211 54.5
Sabra04G0140100 Salix brachista HOM05D008002 ORTHO05D010148 2.5e-49 199.5 209 54.5
COL.COLO4_03847 Corchorus olitorius HOM05D008002 ORTHO05D010148 3.2e-49 199.1 199 53.8
RcHm_v2.0_Chr6g0281201 Rosa chinensis HOM05D008002 ORTHO05D010148 3.2e-49 199.1 217 53.5
Dinv14183 Davidia involucrata HOM05D008002 ORTHO05D010148 5.5e-49 198.4 212 53.3
MD10G1142900 Malus domestica HOM05D008002 ORTHO05D010148 7.1e-49 198.0 211 52.1
Potri.004G208200 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.2e-48 197.2 206 50.5
Potri.009G169400 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.6e-48 196.8 206 51.0
Atru.chr5.3576 Acer truncatum HOM05D008002 ORTHO05D010148 2.1e-48 196.4 209 53.6
Actinidia17988 Actinidia chinensis HOM05D008002 ORTHO05D010148 2.1e-48 196.4 204 54.4
Gorai.013G065000 Gossypium raimondii HOM05D008002 ORTHO05D010148 3.5e-48 195.7 216 51.4
Cfa005392 Carpinus fangiana HOM05D008002 ORTHO05D010148 7.9e-48 194.5 152 61.2
Eucgr.I01542 Eucalyptus grandis HOM05D008002 ORTHO05D010148 7.9e-48 194.5 207 51.7
Gohir.D13G057750 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.3e-47 193.7 216 50.9
Haze_01959 Corylus avellana HOM05D008002 ORTHO05D010148 3.9e-47 192.2 204 52.5
Nn8g40377 Nelumbo nucifera HOM05D008002 ORTHO05D010148 3.9e-47 192.2 211 50.7
Actinidia20583 Actinidia chinensis HOM05D008002 ORTHO05D010148 5.1e-47 191.8 205 52.7
Nn2g12628 Nelumbo nucifera HOM05D008002 ORTHO05D010148 6.7e-47 191.4 211 53.1
TWI75G0824 Tripterygium wilfordii HOM05D008002 ORTHO05D010148 1.5e-46 190.3 151 61.6
CiPaw.06G114200 Carya illinoinensis HOM05D008002 ORTHO05D010148 2.5e-46 189.5 197 49.7
Sc08g0002060 Simmondsia chinensis HOM05D008002 ORTHO05D010148 8.2e-45 184.5 211 47.9
Haze_01969 Corylus avellana HOM05D008002 ORTHO05D010148 5.3e-44 181.8 171 55.0
PGR142G3621 Punica granatum HOM05D008002 ORTHO05D010148 1.2e-43 180.6 211 49.3
Lsat_1_v5_gn_3_48401 Lactuca sativa HOM05D008002 ORTHO05D010148 5.9e-43 178.3 149 56.4
Ciclev10029829m.g Citrus clementina HOM05D008002 ORTHO05D010148 2.5e-41 172.9 205 49.3
Oeu006116.1 Olea europaea HOM05D008002 ORTHO05D010148 7.2e-41 171.4 213 46.9
AT4G38213 Arabidopsis thaliana HOM05D008002 ORTHO05D010148 1.2e-40 170.6 147 57.1
PSO541G1248 Papaver somniferum HOM05D008002 ORTHO05D010148 6.3e-37 158.3 162 50.6
Thhalv10027398m.g Eutrema salsugineum HOM05D008002 ORTHO05D010148 3.1e-36 156.0 144 54.2
Carub.0007s0013 Capsella rubella HOM05D008002 ORTHO05D010148 7.7e-35 151.4 151 53.0
Eucgr.H05000 Eucalyptus grandis HOM05D008002 ORTHO05D010148 3.2e-33 146.0 157 49.7
CSS0003373 Camellia sinensis var. sinensis HOM05D008002 ORTHO05D010148 4.2e-33 145.6 109 62.4
Sp7g37530 Schrenkiella parvula HOM05D008002 ORTHO05D010148 7.2e-33 144.8 136 52.2
SEGI_35818 Sequoiadendron giganteum HOM05D008002 ORTHO05D010148 9.4e-33 144.4 136 50.0
Aqoxy6G02976 Aquilegia oxysepala HOM05D008002 ORTHO05D010148 1.6e-32 143.7 229 41.0
HanXRQChr15g0490081 Helianthus annuus HOM05D008002 ORTHO05D010148 2.8e-29 132.9 110 54.5
AL7G10120 Arabidopsis lyrata HOM05D008002 ORTHO05D010148 2.6e-27 126.3 122 55.7
PSO675G9248 Papaver somniferum HOM05D008002 ORTHO05D010148 2.6e-27 126.3 125 52.0
Zm00001eb035270 Zea mays HOM05D008002 ORTHO05D010148 2.6e-27 126.3 167 41.9
CDE10G0514 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 2.9e-26 122.9 185 43.8
TAR628G1479 Trochodendron aralioides HOM05D008002 ORTHO05D010148 1.9e-25 120.2 89 67.4
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 3.2e-25 119.4 98 61.2
HanXRQChr15g0479771 Helianthus annuus HOM05D008002 ORTHO05D010148 1.2e-24 117.5 109 54.1
HPP92_007470 Vanilla planifolia HOM05D008002 ORTHO05D010148 6.1e-24 115.2 161 39.1
Os08g0512100 Oryza sativa ssp. japonica HOM05D008002 ORTHO05D010148 6.7e-23 111.7 179 38.5
ATR0763G180 Amborella trichopoda HOM05D008002 ORTHO05D010148 2.2e-21 106.7 104 54.8
CARHR293990 Cardamine hirsuta HOM05D008002 ORTHO05D010148 1.1e-20 104.4 76 61.8
MBI01_g17256_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.1e-20 104.4 85 61.2
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 1.8e-20 103.6 90 60.0
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.2e-19 100.9 88 60.2
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 3.5e-19 99.4 91 59.3
CDE10G0941 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 8.5e-18 94.7 90 54.4
Gohir.A13G064166 Gossypium hirsutum HOM05D008002 ORTHO05D010148 3.0e-15 86.3 82 51.2
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 1.5e-06 57.4 67 50.7


User provided reference genes

Program Settings