Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 8.4e-231 803.5 462 100.0
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 2.5e-227 792.0 462 97.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.2e-223 778.9 462 96.1
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 6.9e-209 730.7 462 92.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.8e-186 654.8 462 81.2
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.5e-182 642.5 462 79.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 3.6e-181 638.6 462 79.9
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 6.1e-181 637.9 462 79.4
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 4.0e-180 635.2 462 78.4
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.0e-179 632.9 462 78.8
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.4e-179 631.7 462 76.8
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 5.7e-179 631.3 462 79.4
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 4.8e-178 628.2 462 77.9
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.3e-178 627.9 462 79.2
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.3e-178 627.5 462 79.0
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 5.4e-177 624.8 461 79.0
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 7.0e-177 624.4 462 79.4
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 5.5e-174 614.8 465 77.4
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 7.2e-174 614.4 459 78.2
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 9.4e-174 614.0 458 76.9
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.6e-173 613.2 459 74.7
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.1e-173 612.8 464 70.3
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 2.1e-173 612.8 459 74.5
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 4.7e-173 611.7 459 74.5
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.0e-172 610.5 460 78.3
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.0e-172 610.5 461 75.9
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.0e-172 610.5 463 75.8
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.0e-172 610.5 462 76.0
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.8e-172 609.8 462 75.8
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.8e-172 609.8 464 76.1
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.8e-172 609.8 460 78.3
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 4.0e-172 608.6 459 75.8
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.2e-171 607.1 459 77.6
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.0e-171 606.3 459 76.7
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 2.6e-171 605.9 462 76.8
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 2.6e-171 605.9 462 75.8
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 3.4e-171 605.5 459 77.6
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 7.5e-171 604.4 460 77.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 7.5e-171 604.4 459 74.7
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.9e-170 601.7 462 76.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.4e-169 600.1 459 76.9
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.4e-169 600.1 460 76.1
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.4e-169 600.1 462 76.2
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.8e-169 599.7 463 75.6
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.1e-169 599.0 441 80.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 5.4e-169 598.2 462 76.0
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 7.0e-169 597.8 462 74.7
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.2e-168 597.0 462 75.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.2e-168 597.0 462 74.7
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.5e-168 595.1 462 74.2
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.7e-167 593.2 464 75.4
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 2.3e-167 592.8 504 65.1
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.3e-167 592.8 466 73.6
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 6.6e-167 591.3 464 75.6
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 6.6e-167 591.3 462 74.7
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.9e-166 589.7 459 68.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.9e-166 589.7 459 68.0
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.9e-166 589.7 454 75.1
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 5.6e-166 588.2 463 72.4
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.6e-165 586.6 462 73.8
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.8e-165 585.9 461 73.5
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 3.6e-165 585.5 460 74.1
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 3.6e-165 585.5 459 75.4
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 4.7e-165 585.1 460 72.6
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 6.1e-165 584.7 460 74.6
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.0e-164 583.9 462 74.2
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.4e-164 583.6 462 73.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 4.0e-164 582.0 462 73.8
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 2.9e-162 575.9 462 72.7
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 4.9e-162 575.1 459 72.1
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 4.1e-161 572.0 483 70.2
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.7e-159 566.6 459 71.7
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.3e-158 562.0 462 72.9
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 5.6e-158 561.6 460 72.0
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 5.6e-158 561.6 462 69.5
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 9.5e-158 560.8 460 72.0
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.2e-157 560.5 476 71.0
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.8e-155 551.6 551 63.7
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.4e-153 546.2 493 66.9
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 9.2e-153 544.3 459 71.7
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.0e-152 543.1 462 69.3
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 7.8e-152 541.2 460 69.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.3e-151 540.4 465 62.8
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 2.3e-151 539.7 459 71.2
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 3.0e-151 539.3 456 71.7
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.0e-151 539.3 462 68.8
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 3.0e-151 539.3 463 68.5
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 5.0e-151 538.5 461 69.0
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 6.6e-151 538.1 459 70.6
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.9e-150 536.6 462 69.3
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-150 535.8 462 69.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.3e-150 535.4 462 69.5
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 5.6e-150 535.0 465 68.8
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.8e-149 532.7 387 70.0
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.1e-148 529.3 388 70.4
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.1e-148 529.3 387 70.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 7.5e-147 524.6 462 61.9
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.9e-146 522.7 462 67.1
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 7.1e-145 518.1 462 67.3
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 3.5e-144 515.8 394 67.5
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.3e-143 513.8 460 68.0
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.3e-143 513.8 382 78.8
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 4.3e-142 508.8 459 65.1
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 9.5e-142 507.7 388 67.8
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.4e-140 503.8 463 59.4
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.5e-136 489.2 459 64.5
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 8.9e-132 474.6 462 58.4
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 7.6e-131 471.5 496 61.9
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 3.2e-129 466.1 465 60.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 6.6e-127 458.4 462 64.5
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 9.6e-126 454.5 384 71.6
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.6e-125 453.8 463 61.1
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 5.8e-115 418.7 367 62.9
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 5.5e-113 412.1 463 56.4
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.2e-107 394.4 467 51.4
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.6e-96 355.9 462 48.1
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 6.1e-96 355.5 300 61.7
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 6.1e-88 328.9 314 60.2
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 5.9e-75 285.8 324 61.4
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.9e-66 256.9 389 39.3
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.1e-64 249.2 408 37.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.5e-59 233.0 241 51.5
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.4e-55 221.5 187 67.4
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 5.6e-49 199.5 506 38.7
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.8e-44 184.5 400 31.5
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.5e-41 174.9 159 62.3
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.5e-41 174.9 123 72.4
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.9e-41 174.5 151 62.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 6.8e-39 166.0 504 34.7
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 8.9e-39 165.6 134 64.2
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.0e-34 152.1 121 69.4
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.6e-27 128.3 156 51.9
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.2e-22 112.1 91 63.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.2e-22 112.1 188 39.9
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 4.9e-21 106.7 150 67.3
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 7.1e-20 102.8 68 77.9
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.1e-18 96.7 55 90.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 7.3e-17 92.8 107 52.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.3e-10 72.0 47 74.5
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.7e-10 71.6 97 49.5
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 5.1e-10 70.1 55 70.9
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 5.6e-09 66.6 60 58.3
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 9.6e-09 65.9 49 77.6
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 4.8e-08 63.5 406 20.4
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 4.8e-08 63.5 406 20.4
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 6.2e-08 63.2 64 54.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.1e-07 62.4 57 57.9
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.4e-07 62.0 401 20.7
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.4e-07 62.0 70 48.6
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 9.0e-07 59.3 64 53.1
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 9.0e-07 59.3 398 20.6
MELO3C035393.2 Cucumis melo HOM05D008781 ORTHO05D013374 1.2e-06 58.9 47 70.2
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 1.5e-06 58.5 404 20.3
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 2.0e-06 58.2 243 24.3
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.6e-06 57.8 400 20.0
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 2.6e-06 57.8 254 25.6
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 2.6e-06 57.8 249 24.5


User provided reference genes

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