Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015606.2 Cucumis melo HOM05D003587 ORTHO05D004139 3.0e-88 328.6 172 100.0
CsaV3_1G041910 Cucumis sativus L. HOM05D003587 ORTHO05D004139 4.7e-78 294.7 172 91.3
ClCG03G014310 Citrullus lanatus HOM05D003587 ORTHO05D004139 3.2e-74 282.0 172 87.2
Sed0023945 Sechium edule HOM05D003587 ORTHO05D004139 1.9e-58 229.6 172 74.4
MSTRG.21324 Avicennia marina HOM05D003587 ORTHO05D004139 2.3e-40 169.5 122 73.8
TAR623G1513 Trochodendron aralioides HOM05D003587 ORTHO05D004139 1.1e-39 167.2 169 60.4
CANSAT54G0304 Cannabis sativa HOM05D003587 ORTHO05D004139 1.6e-38 163.3 176 57.4
Cfa010158 Carpinus fangiana HOM05D003587 ORTHO05D004139 2.8e-38 162.5 140 65.0
THA.LOC104811210 Tarenaya hassleriana HOM05D003587 ORTHO05D004139 8.2e-38 161.0 178 55.6
Gorai.006G123700 Gossypium raimondii HOM05D003587 ORTHO05D004139 1.1e-37 160.6 174 55.7
Medtr5g088730 Medicago truncatula HOM05D003587 ORTHO05D004139 1.1e-37 160.6 122 68.0
CSS0013509 Camellia sinensis var. sinensis HOM05D003587 ORTHO05D004139 1.4e-37 160.2 137 65.7
GSVIVG01037380001 Vitis vinifera HOM05D003587 ORTHO05D004139 2.4e-37 159.5 152 63.2
CiPaw.13G146000 Carya illinoinensis HOM05D003587 ORTHO05D004139 3.1e-37 159.1 110 75.5
EL10Ac4g10057 Beta vulgaris HOM05D003587 ORTHO05D004139 6.9e-37 157.9 122 70.5
Gohir.A09G109701 Gossypium hirsutum HOM05D003587 ORTHO05D004139 6.9e-37 157.9 172 54.1
Nn2g14595 Nelumbo nucifera HOM05D003587 ORTHO05D004139 9.0e-37 157.5 172 57.0
Manes.02G134100 Manihot esculenta HOM05D003587 ORTHO05D004139 1.2e-36 157.1 95 83.2
Thecc.09G250900 Theobroma cacao HOM05D003587 ORTHO05D004139 1.2e-36 157.1 172 54.1
Gohir.D09G106200 Gossypium hirsutum HOM05D003587 ORTHO05D004139 1.5e-36 156.8 174 54.6
Lalb_Chr10g0106041 Lupinus albus HOM05D003587 ORTHO05D004139 1.5e-36 156.8 136 63.2
Sabra16G0133600 Salix brachista HOM05D003587 ORTHO05D004139 1.5e-36 156.8 95 83.2
LjContig00564g0003567 Lotus japonicus HOM05D003587 ORTHO05D004139 2.6e-36 156.0 117 69.2
arahy.Tifrunner.gnm1.ann1.Y38JVD Arachis hypogaea HOM05D003587 ORTHO05D004139 3.4e-36 155.6 171 55.0
Potri.001G224950 Populus trichocarpa HOM05D003587 ORTHO05D004139 3.4e-36 155.6 95 83.2
HPP92_001660 Vanilla planifolia HOM05D003587 ORTHO05D004139 3.4e-36 155.6 94 86.2
Duzib150G0536 Durio zibethinus HOM05D003587 ORTHO05D004139 7.6e-36 154.5 95 81.1
Solyc11g072170.2 Solanum lycopersicum HOM05D003587 ORTHO05D004139 1.7e-35 153.3 117 69.2
CAN.G1085.3 Capsicum annuum HOM05D003587 ORTHO05D004139 2.2e-35 152.9 171 53.2
Sp6g24900 Schrenkiella parvula HOM05D003587 ORTHO05D004139 2.2e-35 152.9 175 55.4
Hund07482 Selenicereus undatus HOM05D003587 ORTHO05D004139 2.2e-35 152.9 98 78.6
TPR.G16429 Trifolium pratense HOM05D003587 ORTHO05D004139 2.9e-35 152.5 117 70.1
Eucgr.B03764 Eucalyptus grandis HOM05D003587 ORTHO05D004139 3.8e-35 152.1 113 71.7
RcHm_v2.0_Chr5g0050121 Rosa chinensis HOM05D003587 ORTHO05D004139 3.8e-35 152.1 132 64.4
Thhalv10013310m.g Eutrema salsugineum HOM05D003587 ORTHO05D004139 4.9e-35 151.8 183 57.4
Nitab4.5_0002161g0020 Nicotiana tabacum HOM05D003587 ORTHO05D004139 4.9e-35 151.8 178 56.2
Prupe.4G269300 Prunus persica HOM05D003587 ORTHO05D004139 4.9e-35 151.8 88 89.8
CDE02G1319 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 6.5e-35 151.4 145 62.1
Cc01_g07130 Coffea canephora HOM05D003587 ORTHO05D004139 6.5e-35 151.4 116 71.6
PGSC0003DMG400027414 Solanum tuberosum HOM05D003587 ORTHO05D004139 6.5e-35 151.4 117 69.2
COL.COLO4_00327 Corchorus olitorius HOM05D003587 ORTHO05D004139 1.4e-34 150.2 88 86.4
Lsat_1_v5_gn_5_64961 Lactuca sativa HOM05D003587 ORTHO05D004139 1.9e-34 149.8 117 68.4
SalBow6G4759 Salvia bowleyana HOM05D003587 ORTHO05D004139 1.9e-34 149.8 114 70.2
TWI59G0614 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 1.9e-34 149.8 135 63.0
PSO357G0695 Papaver somniferum HOM05D003587 ORTHO05D004139 3.2e-34 149.1 88 86.4
QL01p020717 Quercus lobata HOM05D003587 ORTHO05D004139 3.2e-34 149.1 91 83.5
BcaB05g23382 Brassica carinata HOM05D003587 ORTHO05D004139 5.5e-34 148.3 119 68.1
Sopen11g029820 Solanum pennellii HOM05D003587 ORTHO05D004139 5.5e-34 148.3 118 70.3
MD03G1163200 Malus domestica HOM05D003587 ORTHO05D004139 9.3e-34 147.5 172 54.1
ECA233G3436 Erigeron canadensis HOM05D003587 ORTHO05D000001 1.6e-33 146.7 93 77.4
Carub.0006s1785 Capsella rubella HOM05D003587 ORTHO05D004139 3.5e-33 145.6 105 75.2
Haze_23544 Corylus avellana HOM05D003587 ORTHO05D004139 3.5e-33 145.6 137 61.3
Ciclev10018028m.g Citrus clementina HOM05D003587 ORTHO05D004139 7.9e-33 144.4 129 62.8
FvH4_3g27580 Fragaria vesca HOM05D003587 ORTHO05D004139 7.9e-33 144.4 127 67.7
Aa31LG1G8880 Aethionema arabicum HOM05D003587 ORTHO05D004139 1.0e-32 144.1 177 54.8
AL6G31010 Arabidopsis lyrata HOM05D003587 ORTHO05D004139 1.3e-32 143.7 90 83.3
AT5G19500 Arabidopsis thaliana HOM05D003587 ORTHO05D004139 1.8e-32 143.3 186 52.2
BcaC03g13680 Brassica carinata HOM05D003587 ORTHO05D004139 1.8e-32 143.3 117 68.4
BNapus_Darmor_BZH_scaffold_38p02370 Brassica napus HOM05D003587 ORTHO05D004139 1.8e-32 143.3 116 69.0
BolC2t06958H Brassica oleracea HOM05D003587 ORTHO05D004139 1.8e-32 143.3 117 68.4
AUR62006588 Chenopodium quinoa HOM05D003587 ORTHO05D004139 2.3e-32 142.9 135 63.7
FAN25G2256 Fragaria x ananassa HOM05D003587 ORTHO05D004139 3.0e-32 142.5 114 66.7
HanXRQChr12g0378151 Helianthus annuus HOM05D003587 ORTHO05D004139 5.1e-32 141.7 93 75.3
BraA02t05510Z Brassica rapa HOM05D003587 ORTHO05D004139 6.7e-32 141.4 105 73.3
Rhsim13G0203000 Rhododendron simsii HOM05D003587 ORTHO05D004139 6.7e-32 141.4 93 80.6
Pp3c11_25650 Physcomitrium patens HOM05D003587 ORTHO05D004139 1.1e-31 140.6 112 66.1
Aqoxy1G00052 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 5.7e-31 138.3 88 80.7
Oeu025946.1 Olea europaea HOM05D003587 ORTHO05D004139 7.4e-31 137.9 115 67.0
SMO115G0193 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 7.4e-31 137.9 111 64.9
SMO115G0099 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 1.6e-30 136.7 111 64.9
Cpa.g.sc34.195 Carica papaya HOM05D003587 ORTHO05D004139 1.1e-29 134.0 76 88.2
Mapoly0007s0093 Marchantia polymorpha HOM05D003587 ORTHO05D004139 3.1e-29 132.5 123 60.2
A02p05580 Brassica napus HOM05D003587 ORTHO05D004139 1.7e-27 126.7 132 58.3
Actinidia07008 Actinidia chinensis HOM05D003587 ORTHO05D004139 3.8e-27 125.6 72 88.9
AagrBONN_evm.TU.Sc2ySwM_344.2860 Anthoceros agrestis HOM05D003587 ORTHO05D004139 9.3e-26 120.9 113 54.9
AUR62000241 Chenopodium quinoa HOM05D003587 ORTHO05D004139 3.6e-25 119.0 71 88.7
Lj2A826G17 Lonicera japonica HOM05D003587 ORTHO05D004139 1.9e-23 113.2 71 83.1
Ah.06g194980 Amaranthus hybridus HOM05D003587 ORTHO05D004139 6.3e-22 108.2 71 81.7
Os07g0662800 Oryza sativa ssp. japonica HOM05D003587 ORTHO05D004139 1.4e-21 107.1 64 79.7
unitig_0.g312 Utricularia gibba HOM05D003587 ORTHO05D004139 2.2e-19 99.8 65 78.5
Hma1.2p1_1632F.1_g294660 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 2.9e-19 99.4 58 84.5
Peaxi162Scf00234g00315 Petunia axillaris HOM05D003587 ORTHO05D004139 2.9e-19 99.4 58 84.5
Ca_06175_v3 Cicer arietinum L. HOM05D003587 ORTHO05D004139 1.1e-18 97.4 58 81.0
MCO13G640 Micromonas commoda HOM05D003587 ORTHO05D004139 2.5e-18 96.3 73 64.4
Nitab4.5_0002567g0150 Nicotiana tabacum HOM05D003587 ORTHO05D004139 1.3e-14 84.0 117 50.4
PRCOL_00002329 Prasinoderma coloniale HOM05D003587 ORTHO05D004139 4.8e-14 82.0 86 48.8
Cre13.g572200 Chlamydomonas reinhardtii HOM05D003587 ORTHO05D004139 6.9e-13 78.2 83 53.0
vmacro07076 Vaccinium macrocarpon HOM05D003587 ORTHO05D004139 8.0e-09 64.7 67 41.8
Oeu027482.2 Olea europaea HOM05D003587 ORTHO05D004139 1.4e-08 63.9 68 42.6
Cc09_g02070 Coffea canephora HOM05D003587 ORTHO05D004139 1.8e-08 63.5 73 42.5
Hma1.2p1_1004F.1_g246830 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 3.9e-08 62.4 69 42.0
PGR142G0620 Punica granatum HOM05D003587 ORTHO05D004139 3.9e-08 62.4 68 42.6
SalBow3G0063 Salvia bowleyana HOM05D003587 ORTHO05D004139 3.9e-08 62.4 82 37.8
SEGI_26742 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 3.9e-08 62.4 79 43.0
SEGI_29926 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 3.9e-08 62.4 79 43.0
vmacro04091 Vaccinium macrocarpon HOM05D003587 ORTHO05D004139 1.1e-07 60.8 98 45.9
Actinidia38276 Actinidia chinensis HOM05D003587 ORTHO05D004139 1.5e-07 60.5 63 41.3
Aqoxy3G02282_Aqoxy3G02283 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 1.5e-07 60.5 138 31.2
Nn2g10780 Nelumbo nucifera HOM05D003587 ORTHO05D004139 2.6e-07 59.7 60 45.0
MSTRG.8154 Avicennia marina HOM05D003587 ORTHO05D004139 7.4e-07 58.2 67 37.3
ATR0115G029 Amborella trichopoda HOM05D003587 ORTHO05D004139 9.7e-07 57.8 57 45.6
arahy.Tifrunner.gnm1.ann1.3IGY6I Arachis hypogaea HOM05D003587 ORTHO05D004139 1.3e-06 57.4 139 29.5
Lsat_1_v5_gn_2_114281 Lactuca sativa HOM05D003587 ORTHO05D004139 1.3e-06 57.4 63 39.7
Lj1A914G42 Lonicera japonica HOM05D003587 ORTHO05D004139 1.3e-06 57.4 67 37.3
Lalb_Chr19g0129681 Lupinus albus HOM05D003587 ORTHO05D004139 1.3e-06 57.4 68 41.2
Nitab4.5_0000575g0260 Nicotiana tabacum HOM05D003587 ORTHO05D004139 1.3e-06 57.4 90 32.2
Peaxi162Scf00809g00432 Petunia axillaris HOM05D003587 ORTHO05D004139 1.3e-06 57.4 63 38.1
CDE05G3302 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 1.7e-06 57.0 57 45.6
ECA238G1416 Erigeron canadensis HOM05D003587 ORTHO05D004139 1.7e-06 57.0 94 30.9
Lj5g0014900 Lotus japonicus HOM05D003587 ORTHO05D004139 1.7e-06 57.0 68 36.8
PSO384G5085 Papaver somniferum HOM05D003587 ORTHO05D004139 1.7e-06 57.0 64 40.6
QL08p056026 Quercus lobata HOM05D003587 ORTHO05D004139 1.7e-06 57.0 75 37.3
arahy.Tifrunner.gnm1.ann1.TJZR4S Arachis hypogaea HOM05D003587 ORTHO05D004139 2.2e-06 56.6 105 33.3
CSS0029358 Camellia sinensis var. sinensis HOM05D003587 ORTHO05D004139 2.2e-06 56.6 60 43.3
Solyc04g049340.3 Solanum lycopersicum HOM05D003587 ORTHO05D004139 2.8e-06 56.2 63 36.5
Sopen04g019250 Solanum pennellii HOM05D003587 ORTHO05D004139 2.8e-06 56.2 63 36.5
Dinv11778 Davidia involucrata HOM05D003587 ORTHO05D004139 3.7e-06 55.8 60 40.0
MD07G1175000 Malus domestica HOM05D003587 ORTHO05D004139 3.7e-06 55.8 68 36.8
PSO339G3050 Papaver somniferum HOM05D003587 ORTHO05D004139 3.7e-06 55.8 64 39.1
ClCG08G007470 Citrullus lanatus HOM05D003587 ORTHO05D004139 4.8e-06 55.5 122 32.8
DCAR_019108 Daucus carota HOM05D003587 ORTHO05D007145 4.8e-06 55.5 60 40.0
Os03g0254200 Oryza sativa ssp. japonica HOM05D003587 ORTHO05D004139 4.8e-06 55.5 58 46.6
RcHm_v2.0_Chr1g0363461 Rosa chinensis HOM05D003587 ORTHO05D004139 4.8e-06 55.5 61 37.7


User provided reference genes

Program Settings