Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 4116.2 2096 100.0
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 3555.8 2064 90.1
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 3420.2 2202 82.4
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 3258.4 2076 82.1
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2566.2 2106 65.4
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2558.5 2104 65.7
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2556.6 2104 65.4
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2519.2 2144 63.9
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2494.2 2188 62.9
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2473.4 2134 63.4
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2443.3 2103 63.3
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2430.6 2102 63.5
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2420.2 2099 63.0
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2411.3 2097 62.3
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2398.6 2095 62.9
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2390.5 2097 62.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2384.0 2106 61.8
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2382.1 2094 61.5
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2381.3 2107 62.1
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2375.1 2095 62.0
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2363.2 2109 61.5
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2360.1 2098 62.1
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2359.7 2116 61.6
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2355.9 2103 61.8
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2355.1 2113 61.6
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2353.6 2105 61.4
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2351.6 2100 61.3
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2346.6 2103 61.6
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2336.6 2101 61.3
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2325.1 2104 61.0
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2321.2 2106 61.1
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2308.1 2172 58.7
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2305.4 2090 60.7
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2299.6 2090 60.8
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2298.9 2097 60.4
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2298.9 2061 61.6
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2292.7 2111 60.0
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2285.0 2107 60.3
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2277.3 2102 60.5
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2277.3 2107 60.1
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2267.3 2109 60.4
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2262.6 2109 59.8
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2218.7 2092 57.9
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2205.6 2116 58.8
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2195.2 2110 58.8
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2191.4 2151 58.0
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2153.3 1954 61.0
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2132.5 2102 56.2
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2120.1 2105 56.8
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2119.4 2115 56.8
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2112.8 2114 56.5
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2111.3 2112 56.8
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2110.5 2121 54.9
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2097.0 2113 55.5
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2093.2 2083 55.9
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2081.2 2152 56.5
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2077.4 2107 56.1
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2067.4 2114 56.4
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2060.4 2091 55.1
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2056.6 2093 55.1
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2055.8 2090 54.9
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2051.2 2103 56.3
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2046.6 2145 52.8
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2045.8 2095 55.1
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2041.2 2092 54.8
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2040.0 2091 55.8
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2038.1 2090 54.5
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2035.4 1722 64.6
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2028.1 2101 54.7
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2025.4 2098 55.5
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1993.0 2100 53.1
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1984.9 2100 53.6
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1974.5 2092 53.6
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1974.1 2080 54.0
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1965.7 2096 54.6
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1962.6 2117 52.9
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1961.8 2099 53.4
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1954.9 2114 52.6
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1954.1 2107 53.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1949.1 2077 53.0
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1948.7 2148 52.5
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1947.2 2082 52.2
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1940.6 2020 55.7
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1921.0 2116 53.7
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1871.3 2275 50.3
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1858.6 2054 52.1
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1851.6 2011 52.9
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1807.7 1841 54.6
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1719.5 1705 56.4
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1715.7 2133 48.3
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1713.7 1810 53.9
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1630.9 1432 61.5
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1630.2 1574 57.1
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1614.0 1745 54.3
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1598.2 1472 62.0
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1516.9 1251 63.6
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1486.9 2084 44.7
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1375.9 2038 42.6
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1290.4 1679 45.6
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1263.1 2129 40.7
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1253.0 1271 55.7
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1233.8 1233 58.5
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1198.7 1501 47.3
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1089.7 836 67.5
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.3e-307 1060.1 834 65.9
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 9.5e-306 1054.7 835 64.9
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.1e-272 943.3 1037 50.3
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 9.0e-272 941.8 1130 47.9
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.2e-268 931.4 900 56.0
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 1.1e-248 865.1 2223 32.3
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 8.8e-243 845.5 1217 43.5
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.3e-232 809.7 1365 40.9
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 7.0e-224 782.7 2239 30.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 2.0e-194 684.9 1077 40.2
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 5.6e-173 613.6 489 62.8
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.9e-168 598.6 591 52.6
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 5.1e-166 590.5 673 53.8
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 4.3e-165 587.4 1926 29.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 5.3e-147 527.3 2045 27.7
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.8e-142 512.3 1626 28.7
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.6e-132 479.2 380 63.2
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 4.5e-130 471.1 579 50.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.0e-110 405.2 318 66.4
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.6e-106 392.1 399 54.1
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 8.5e-105 387.1 516 47.5
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.0e-98 365.9 807 35.8
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 4.7e-87 328.2 345 53.6
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.9e-84 318.9 347 49.9
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 2.9e-84 318.9 423 51.3
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 6.3e-84 317.8 380 48.2
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 2.3e-81 309.3 188 81.9
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.3e-76 293.5 303 54.5
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 7.8e-74 284.3 211 67.8
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 4.7e-71 275.0 210 66.2
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 1.1e-62 247.3 197 69.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-61 243.4 1167 25.1
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 5.4e-59 235.0 157 73.9
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 3.5e-58 232.3 134 82.8
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.3e-57 230.3 297 45.8
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 1.3e-57 230.3 130 83.8
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.1e-55 223.0 131 77.1
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 4.4e-53 215.3 402 41.8
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.6e-50 205.3 126 74.6
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.7e-49 203.4 143 70.6
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 2.5e-48 199.5 264 47.3
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 7.3e-48 198.0 266 45.5
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 4.0e-46 192.2 416 37.7
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 4.0e-46 192.2 326 42.0
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 2.5e-40 172.9 122 73.8
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 5.6e-40 171.8 623 27.9
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 2.8e-31 142.9 89 74.2
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.4e-27 130.6 72 76.4
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 4.2e-27 129.0 132 56.1
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.6e-26 127.1 367 31.3
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 1.1e-24 120.9 452 33.2
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 6.9e-22 111.7 109 57.8
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 5.9e-21 108.6 106 58.5
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 5.9e-21 108.6 106 58.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.2e-19 102.4 119 55.5
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 9.3e-19 101.3 140 49.3
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.2e-18 100.9 67 73.1
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 2.1e-18 100.1 141 46.8
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.9e-16 93.6 57 71.9
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.3e-15 90.9 160 40.0
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.6e-15 90.5 89 58.4
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.4e-14 87.4 44 86.4
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 1.4e-14 87.4 44 86.4
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 7.2e-11 75.1 110 44.5
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 4.6e-10 72.4 78 50.0
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 3.0e-09 69.7 89 51.7
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 3.1e-06 59.7 54 51.9


User provided reference genes

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