Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 2.6e-74 282.0 140 100.0
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 1.6e-71 272.7 140 97.9
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 2.8e-60 235.3 138 86.2
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 4.6e-55 218.0 140 78.6
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 5.1e-30 134.8 141 53.2
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 9.6e-29 130.6 141 53.2
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 9.6e-29 130.6 141 51.8
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 1.2e-26 123.6 167 45.5
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 5.8e-26 121.3 144 50.7
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.7e-25 119.8 144 51.4
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 4.2e-24 115.2 144 52.8
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 4.2e-24 115.2 138 49.3
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 7.1e-24 114.4 141 48.2
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 1.2e-23 113.6 147 48.3
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 1.6e-23 113.2 147 49.0
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 4.6e-23 111.7 149 48.3
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.3e-22 109.4 143 46.9
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 1.5e-21 106.7 138 44.2
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.5e-21 105.9 147 45.6
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 2.5e-21 105.9 151 48.3
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 3.3e-21 105.5 141 44.0
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 8.1e-20 100.9 144 41.7
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 1.1e-19 100.5 157 43.9
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 1.4e-19 100.1 150 45.3
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 3.1e-19 99.0 139 46.8
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.2e-18 97.1 138 46.4
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 1.5e-18 96.7 162 38.3
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 2.0e-18 96.3 130 44.6
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 2.6e-18 95.9 146 41.8
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 3.4e-18 95.5 163 38.7
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 4.5e-18 95.1 166 36.1
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 4.5e-18 95.1 122 48.4
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 1.3e-17 93.6 169 36.7
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 1.3e-17 93.6 151 41.1
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 1.7e-17 93.2 145 43.4
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 3.8e-17 92.0 166 37.3
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 3.8e-17 92.0 150 40.7
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 6.5e-17 91.3 122 47.5
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.1e-16 90.5 161 36.0
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 1.4e-16 90.1 159 41.5
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 1.4e-16 90.1 173 35.3
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 1.9e-16 89.7 140 40.0
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.5e-16 89.4 127 45.7
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 4.2e-16 88.6 159 41.5
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 5.5e-16 88.2 149 37.6
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 7.1e-16 87.8 142 43.7
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 3.5e-15 85.5 166 34.9
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 1.0e-14 84.0 159 39.0
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 1.0e-14 84.0 159 39.0
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 3.0e-14 82.4 161 35.4
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 6.7e-14 81.3 171 35.7
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 6.7e-14 81.3 132 45.5
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 8.7e-14 80.9 155 36.8
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 8.7e-14 80.9 118 42.4
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 1.9e-13 79.7 142 41.5
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 5.7e-13 78.2 141 41.1
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 2.8e-12 75.9 142 38.0
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 6.3e-12 74.7 128 38.3
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 6.3e-12 74.7 143 41.3
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 6.3e-12 74.7 141 41.8
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 1.4e-11 73.6 141 38.3
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 2.4e-11 72.8 144 37.5
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 1.2e-10 70.5 143 32.2
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 2.6e-10 69.3 134 40.3
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 3.4e-10 68.9 121 43.8
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 1.0e-09 67.4 81 51.9
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 1.3e-09 67.0 124 37.9
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 1.3e-09 67.0 106 42.5
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 5.0e-09 65.1 144 39.6
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 6.5e-09 64.7 84 46.4
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 6.5e-09 64.7 120 41.7
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 1.4e-08 63.5 133 35.3
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 1.4e-08 63.5 109 40.4
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 1.9e-08 63.2 145 33.8
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 3.2e-08 62.4 143 37.8
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 3.2e-08 62.4 132 39.4
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 9.3e-08 60.8 84 44.0
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.2e-07 60.5 137 35.8
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 1.6e-07 60.1 131 31.3
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 1.6e-07 60.1 118 39.0
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 3.6e-07 58.9 124 32.3
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 6.1e-07 58.2 75 42.7
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 6.1e-07 58.2 117 39.3
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 7.9e-07 57.8 100 42.0
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.8e-06 56.6 84 40.5
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.8e-06 56.6 84 42.9
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 2.3e-06 56.2 126 34.1
CARHR045140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 2.3e-06 56.2 57 49.1
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.3e-06 56.2 103 37.9
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.3e-06 56.2 103 37.9
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 2.3e-06 56.2 96 41.7
CBR_g12019 Chara braunii HOM05D003947 ORTHO05D004614 3.0e-06 55.8 46 63.0
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 3.0e-06 55.8 103 36.9
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 3.0e-06 55.8 84 42.9
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 3.0e-06 55.8 145 35.9
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 3.9e-06 55.5 94 40.4
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 3.9e-06 55.5 142 38.0
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 3.9e-06 55.5 145 35.9
FAN05G3304 Fragaria x ananassa HOM05D067380 ORTHO05D009181 5.1e-06 55.1 65 52.3
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 6.7e-06 54.7 121 33.9
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 6.7e-06 54.7 95 38.9
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 6.7e-06 54.7 97 40.2


User provided reference genes

Program Settings