Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 3.4e-118 428.3 215 100.0
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.3e-114 415.6 232 92.2
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 7.4e-113 410.6 233 91.8
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 4.5e-110 401.4 233 89.7
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 1.0e-109 400.2 233 89.3
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 3.2e-100 368.6 231 81.8
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 7.2e-100 367.5 234 80.8
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.2e-99 366.7 238 79.8
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 1.2e-99 366.7 233 79.8
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.2e-99 366.7 233 79.8
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-99 366.3 233 79.4
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-99 366.3 233 79.4
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 2.7e-99 365.5 234 79.9
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 2.7e-99 365.5 228 82.0
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.6e-99 365.2 233 79.4
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.6e-99 365.2 233 79.0
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 3.6e-99 365.2 234 80.3
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 4.6e-99 364.8 236 79.7
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 4.6e-99 364.8 236 79.2
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.1e-99 364.4 231 81.4
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 7.9e-99 364.0 233 78.5
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.0e-98 363.6 241 77.6
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 2.3e-98 362.5 233 79.4
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.3e-98 362.5 237 77.6
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 3.9e-98 361.7 238 79.0
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 3.9e-98 361.7 231 80.5
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.1e-98 361.3 239 79.1
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 6.7e-98 360.9 231 79.2
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.5e-97 359.8 234 80.3
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.5e-97 359.8 236 78.8
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.3e-97 358.6 233 77.7
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 9.7e-97 357.1 234 78.6
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.3e-96 356.7 233 78.5
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.8e-96 355.5 231 78.8
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 2.8e-96 355.5 232 78.4
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 3.7e-96 355.1 233 78.1
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 3.7e-96 355.1 233 79.0
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 4.8e-96 354.8 233 77.3
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 6.3e-96 354.4 239 77.0
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 6.3e-96 354.4 233 77.7
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 6.3e-96 354.4 239 77.4
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 8.2e-96 354.0 233 76.8
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 1.1e-95 353.6 236 78.0
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.4e-95 353.2 239 77.0
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 1.4e-95 353.2 233 75.5
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.8e-95 352.8 234 78.2
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 1.8e-95 352.8 233 78.1
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 2.4e-95 352.4 224 77.7
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 3.1e-95 352.1 240 76.7
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 4.1e-95 351.7 231 77.1
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 1.2e-94 350.1 233 76.0
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 2.6e-94 349.0 224 77.7
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 2.6e-94 349.0 224 77.7
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 4.5e-94 348.2 224 76.8
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 1.3e-93 346.7 235 77.9
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.2e-93 345.9 248 74.2
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 2.2e-93 345.9 224 75.9
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 1.1e-92 343.6 233 74.7
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 1.4e-92 343.2 233 75.5
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 2.5e-92 342.4 233 74.7
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 3.2e-92 342.0 233 76.0
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 4.2e-92 341.7 233 76.0
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.2e-91 340.1 232 76.3
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 2.1e-91 339.3 233 74.7
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 2.1e-91 339.3 216 76.4
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 2.7e-91 339.0 240 72.1
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 2.7e-91 339.0 237 73.8
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 4.7e-91 338.2 233 73.8
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 6.1e-91 337.8 240 71.2
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 6.1e-91 337.8 236 73.7
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 6.1e-91 337.8 234 73.9
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 7.9e-91 337.4 238 72.7
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 7.9e-91 337.4 231 74.9
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 1.0e-90 337.0 233 74.2
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 1.8e-90 336.3 232 72.4
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 5.1e-90 334.7 236 72.9
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 8.8e-90 334.0 233 73.4
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 2.0e-89 332.8 233 73.0
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 3.3e-89 332.0 239 70.7
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 3.3e-89 332.0 221 78.3
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 4.4e-89 331.6 232 71.6
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 2.2e-88 329.3 232 71.1
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 2.2e-88 329.3 232 71.1
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 3.7e-88 328.6 232 69.0
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.7e-88 328.6 240 69.6
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 3.7e-88 328.6 232 70.3
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 4.8e-88 328.2 232 69.4
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 4.8e-88 328.2 232 69.4
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 6.3e-88 327.8 233 70.0
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 6.3e-88 327.8 237 70.0
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.1e-87 327.0 240 71.7
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 1.8e-87 326.2 233 70.0
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 1.8e-87 326.2 232 70.3
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.8e-87 326.2 234 70.5
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 1.8e-87 326.2 223 72.6
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 3.1e-87 325.5 227 73.1
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 4.1e-87 325.1 230 70.4
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 4.1e-87 325.1 233 74.2
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 5.3e-87 324.7 232 70.3
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 5.3e-87 324.7 230 71.3
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 9.1e-87 323.9 227 70.0
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 2.0e-86 322.8 216 72.7
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 2.6e-86 322.4 228 71.1
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.0e-85 320.5 223 72.2
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.3e-85 320.1 232 70.3
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 1.3e-85 320.1 216 70.4
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 1.5e-84 316.6 325 55.7
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 7.2e-84 314.3 256 62.9
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.2e-83 313.5 216 73.6
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 8.0e-83 310.8 239 68.6
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 2.3e-82 309.3 304 55.9
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 5.2e-82 308.1 229 66.4
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 1.1e-79 300.4 223 64.1
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 4.1e-79 298.5 187 81.3
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.6e-78 296.6 201 77.6
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 9.4e-76 287.3 222 62.2
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 3.6e-75 285.4 222 62.2
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 8.0e-75 284.3 232 61.6
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.0e-74 283.9 232 62.5
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 3.0e-74 282.3 197 69.5
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 6.8e-74 281.2 191 72.3
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 4.4e-73 278.5 228 60.5
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.3e-72 276.9 192 71.9
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 2.4e-71 272.7 197 70.6
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.7e-61 240.0 167 68.3
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.1e-60 237.3 196 61.7
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 6.4e-56 221.5 160 70.0
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.5e-54 215.7 210 58.1
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.4e-47 193.7 157 59.2
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 5.4e-47 191.8 217 46.5
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 1.5e-44 183.7 116 74.1
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 4.1e-39 165.6 103 81.6
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 3.8e-32 142.5 199 34.2
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 2.1e-19 100.1 97 59.8
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 2.4e-18 96.7 208 28.8
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.2e-09 67.8 73 42.5


User provided reference genes

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