Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.7e-115 417.9 218 100.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.1e-68 263.8 220 65.9
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.3e-56 223.8 215 60.0
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.2e-56 223.0 117 89.7
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 5.6e-52 208.4 214 52.8
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 9.0e-50 201.1 228 52.6
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 8.4e-48 194.5 221 52.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 4.6e-46 188.7 130 66.9
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.0e-46 188.3 207 57.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 6.0e-46 188.3 130 66.9
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.3e-45 186.4 230 49.6
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 3.9e-45 185.7 238 47.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 6.7e-45 184.9 161 60.2
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 7.4e-44 181.4 138 60.9
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.6e-44 181.0 207 51.2
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 6.3e-43 178.3 215 52.1
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 8.2e-43 177.9 124 67.7
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 8.2e-43 177.9 165 59.4
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.0e-41 173.3 117 67.5
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.9e-41 171.8 219 47.0
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.9e-41 171.8 219 47.0
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 5.9e-41 171.8 136 62.5
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.2e-40 169.9 157 59.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 6.5e-40 168.3 125 63.2
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 6.5e-40 168.3 127 65.4
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.5e-40 168.3 122 66.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.5e-40 168.3 122 66.4
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.4e-39 167.2 135 60.7
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.9e-39 166.8 211 51.7
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.9e-39 166.8 128 64.1
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.5e-39 166.4 129 65.1
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 7.2e-39 164.9 272 44.9
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 9.3e-39 164.5 233 46.8
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.3e-39 164.5 152 56.6
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 9.3e-39 164.5 139 59.0
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.2e-38 164.1 130 63.8
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.6e-38 163.7 125 63.2
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.6e-38 163.7 120 61.7
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.1e-38 163.3 234 47.4
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 4.6e-38 162.2 233 44.2
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 6.1e-38 161.8 116 63.8
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 7.9e-38 161.4 119 64.7
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.3e-37 159.8 116 60.3
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.1e-36 157.5 204 49.0
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 9.7e-36 154.5 227 44.9
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.2e-35 153.3 114 61.4
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.8e-35 152.9 173 52.6
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 3.7e-35 152.5 129 55.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 4.8e-35 152.1 143 58.0
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 4.8e-35 152.1 143 58.0
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 8.2e-35 151.4 217 52.1
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 8.2e-35 151.4 214 47.7
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.8e-34 150.2 208 51.4
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.8e-34 150.2 222 45.5
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.1e-34 149.1 130 58.5
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 5.3e-34 148.7 216 48.6
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 5.3e-34 148.7 147 59.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 5.3e-34 148.7 235 45.1
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 6.9e-34 148.3 111 60.4
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 6.9e-34 148.3 144 55.6
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 9.1e-34 147.9 203 46.8
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-33 147.5 114 59.6
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.2e-33 147.5 114 59.6
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-33 147.5 214 44.9
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.4e-33 146.0 234 46.6
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-33 145.6 117 59.0
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 4.5e-33 145.6 117 59.0
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 4.5e-33 145.6 227 45.8
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.0e-32 144.4 91 73.6
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.2e-32 143.3 111 59.5
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 5.0e-32 142.1 202 48.0
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 6.5e-32 141.7 227 44.9
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.9e-31 140.2 93 68.8
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 2.5e-31 139.8 218 50.0
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 5.5e-31 138.7 91 71.4
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.5e-31 138.7 229 43.7
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-30 137.5 136 52.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-30 137.1 97 70.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.7e-30 136.3 93 66.7
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.6e-30 136.0 98 69.4
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.6e-30 136.0 183 44.8
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 4.6e-30 135.6 229 41.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 6.1e-30 135.2 143 55.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.8e-29 133.7 109 64.2
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.8e-29 133.7 70 97.1
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 3.9e-29 132.5 126 54.8
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 3.9e-29 132.5 86 65.1
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.0e-28 130.2 89 68.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.6e-28 129.8 106 58.5
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 4.4e-28 129.0 211 42.7
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.2e-27 126.7 86 67.4
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 2.8e-27 126.3 98 63.3
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 6.3e-27 125.2 220 45.9
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.4e-26 124.0 102 59.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.4e-26 124.0 89 67.4
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 6.9e-26 121.7 227 39.6
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.2e-25 120.9 227 41.0
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.0e-24 117.9 91 60.4
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 6.5e-24 115.2 80 71.2
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.4e-23 114.0 126 49.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 3.2e-23 112.8 74 71.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 9.4e-23 111.3 199 36.2
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.6e-22 110.5 92 58.7
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.6e-22 110.5 92 58.7
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.1e-22 108.6 83 67.5
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 6.1e-22 108.6 75 69.3
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 7.9e-22 108.2 83 63.9
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.8e-21 107.1 154 41.6
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.1e-20 104.4 93 54.8
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.0e-20 103.6 173 41.0
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.7e-20 102.1 72 72.2
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 5.7e-20 102.1 83 57.8
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 7.4e-20 101.7 128 44.5
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 9.7e-20 101.3 179 39.1
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.7e-19 100.5 211 38.4
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.7e-19 99.4 64 68.8
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 3.7e-19 99.4 100 49.0
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 8.2e-19 98.2 72 65.3
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.4e-18 97.4 67 71.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.4e-18 96.7 68 72.1
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.4e-18 96.7 213 41.8
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 1.6e-17 94.0 62 67.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.5e-17 92.8 86 52.3
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 7.7e-17 91.7 119 44.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-16 89.4 92 52.2
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-16 89.4 92 52.2
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.9e-15 87.0 91 49.5
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 4.2e-15 85.9 85 56.5
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 5.5e-15 85.5 63 65.1
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 7.2e-15 85.1 65 63.1
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.6e-14 84.0 60 70.0
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.1e-14 83.6 216 31.0
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.7e-14 82.4 72 55.6
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.0e-13 81.3 210 35.2
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 2.3e-13 80.1 71 56.3
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.3e-13 80.1 107 41.1
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 4.0e-13 79.3 182 34.6
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 5.2e-13 79.0 54 74.1
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 5.2e-13 79.0 65 66.2
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.5e-12 77.4 129 39.5
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 2.0e-12 77.0 61 60.7
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.0e-12 77.0 81 51.9
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.4e-12 75.9 66 62.1
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 4.4e-12 75.9 65 56.9
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 7.5e-12 75.1 81 51.9
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 7.5e-12 75.1 49 77.6
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 9.7e-12 74.7 197 32.0
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.3e-11 74.3 66 48.5
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.2e-11 73.6 42 83.3
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.2e-11 73.6 137 38.7
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 2.8e-11 73.2 81 50.6
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.8e-11 73.2 42 83.3
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.7e-11 72.8 47 72.3
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-10 71.2 50 74.0
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.1e-10 71.2 126 35.7
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.8e-10 70.5 42 78.6
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 4.1e-10 69.3 38 78.9
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 4.1e-10 69.3 42 73.8
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 4.1e-10 69.3 53 58.5
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 5.3e-10 68.9 41 75.6
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 7.0e-10 68.6 38 84.2
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 9.1e-10 68.2 42 78.6
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 2.7e-09 66.6 68 58.8
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.9e-09 65.5 95 35.8
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.7e-08 63.9 122 36.1
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 2.2e-08 63.5 195 31.8
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.2e-07 59.7 38 71.1
Mapoly0073s0064 Marchantia polymorpha HOM05D002369 ORTHO05D002435 4.2e-07 59.3 104 36.5
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 2.1e-06 57.0 50 50.0
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 2.7e-06 56.6 52 53.8


User provided reference genes

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