Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 3.3e-109 398.3 188 100.0
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 9.6e-109 396.7 188 99.5
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 2.1e-108 395.6 187 98.4
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 8.5e-105 383.6 188 94.7
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.9e-104 382.5 188 94.7
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.7e-92 342.8 184 83.2
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.8e-92 342.0 185 82.7
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.8e-92 342.0 185 82.7
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.8e-91 339.3 185 82.7
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.5e-90 336.3 184 81.0
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.4e-90 335.1 183 80.9
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.2e-89 332.4 185 81.1
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 2.9e-89 332.0 184 78.8
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 1.4e-88 329.7 188 78.7
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.5e-88 328.9 183 79.2
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 3.2e-88 328.6 181 80.1
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 4.2e-88 328.2 180 80.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 4.2e-88 328.2 185 80.0
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 5.5e-88 327.8 185 80.0
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 5.5e-88 327.8 185 80.0
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.6e-87 326.2 184 78.8
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.6e-87 326.2 184 78.8
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 2.1e-87 325.9 184 76.1
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 6.1e-87 324.3 187 78.1
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 6.1e-87 324.3 191 77.0
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 7.9e-87 323.9 185 77.3
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 3.0e-86 322.0 184 76.6
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.6e-85 318.9 176 80.1
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 2.6e-85 318.9 204 73.5
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 4.4e-85 318.2 184 77.2
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.4e-85 318.2 177 82.5
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.3e-84 316.6 181 79.0
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.3e-84 316.6 179 81.0
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 2.2e-84 315.8 181 77.9
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.8e-84 315.5 184 77.7
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 6.3e-84 314.3 183 76.0
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 6.3e-84 314.3 181 78.5
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.3e-84 314.3 182 76.9
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 6.3e-84 314.3 184 74.5
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 8.2e-84 313.9 185 76.8
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.4e-83 313.2 177 81.9
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.8e-83 312.8 200 73.5
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.8e-83 312.8 182 76.9
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 2.4e-83 312.4 185 75.7
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.4e-83 312.4 178 77.5
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 3.1e-83 312.0 184 76.1
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 4.1e-83 311.6 186 74.2
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.1e-83 311.6 188 73.4
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.1e-83 311.6 188 73.4
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 5.3e-83 311.2 181 76.2
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 7.0e-83 310.8 188 73.4
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 7.0e-83 310.8 181 74.0
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 9.1e-83 310.5 181 76.2
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.1e-83 310.5 185 74.1
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.1e-83 310.5 185 74.6
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.2e-82 310.1 185 74.6
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.6e-82 309.7 185 75.1
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.6e-82 309.7 185 74.1
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-82 308.9 183 74.3
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 2.6e-82 308.9 179 77.1
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.6e-82 308.9 175 77.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-82 308.5 185 73.5
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.5e-82 308.5 185 74.1
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 4.5e-82 308.1 181 75.7
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.9e-82 307.8 185 73.5
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.9e-82 307.8 185 74.1
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 5.9e-82 307.8 189 75.1
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 7.7e-82 307.4 181 75.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 7.7e-82 307.4 178 76.4
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 7.7e-82 307.4 178 76.4
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.7e-81 306.2 179 76.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.7e-81 306.2 179 76.0
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.2e-81 305.8 178 75.8
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.2e-81 305.8 178 75.8
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 5.0e-81 304.7 181 74.0
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 5.0e-81 304.7 182 73.6
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 8.5e-81 303.9 181 74.0
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.5e-80 302.4 186 72.0
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 3.2e-80 302.0 189 74.6
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 3.2e-80 302.0 182 72.5
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 5.5e-80 301.2 185 70.8
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.6e-79 298.5 195 69.7
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.1e-79 297.7 185 70.3
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 6.1e-79 297.7 207 66.2
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.0e-78 297.0 179 75.4
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.4e-78 296.6 184 73.4
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.2e-77 293.5 215 63.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 3.3e-77 292.0 176 71.0
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 3.3e-77 292.0 186 69.4
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 3.3e-77 292.0 186 69.4
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.7e-77 290.4 228 60.5
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-76 290.0 228 60.1
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 8.2e-76 287.3 168 75.6
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.5e-74 282.0 180 70.6
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 4.5e-74 281.6 183 69.9
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.7e-74 280.8 164 76.2
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.2e-73 279.3 186 66.7
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.9e-73 278.9 177 72.9
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.9e-73 278.9 177 72.9
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 8.5e-73 277.3 158 78.5
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.1e-72 276.9 154 77.9
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.5e-72 275.8 184 67.4
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 9.4e-72 273.9 154 77.9
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 9.4e-72 273.9 199 64.8
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.2e-71 273.5 167 74.9
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 4.4e-69 265.0 183 68.3
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 5.7e-69 264.6 183 68.9
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.3e-68 263.5 151 75.5
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.2e-68 262.7 171 70.8
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.1e-67 258.8 209 58.4
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.1e-67 258.5 149 73.8
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 5.4e-67 258.1 148 74.3
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 9.1e-67 257.3 149 73.2
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.2e-66 256.9 281 49.5
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 4.5e-66 255.0 155 72.3
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.5e-64 250.0 140 76.4
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.6e-63 245.4 146 74.0
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 6.1e-63 244.6 187 59.9
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 2.4e-59 232.6 178 61.8
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.9e-56 223.0 178 59.6
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 9.5e-56 220.7 184 53.3
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 3.4e-53 212.2 194 56.7
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-52 210.3 118 77.1
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 6.4e-52 208.0 182 52.7
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.8e-51 206.5 182 56.0
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 5.2e-46 188.3 202 47.0
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 8.9e-46 187.6 208 47.1
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.9e-44 182.6 173 44.5
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.9e-44 182.6 173 44.5
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.9e-44 181.8 182 54.4
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 8.3e-44 181.0 121 63.6
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.1e-43 180.6 89 89.9
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 9.5e-40 167.5 205 40.5
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.1e-38 162.5 178 41.0
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 4.0e-38 162.2 162 49.4
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.2e-38 161.8 90 76.7
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.4e-37 159.1 143 53.1
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.4e-37 158.7 203 37.4
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.1e-34 149.8 93 73.1
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 2.7e-34 149.4 166 43.4
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.6e-34 148.7 149 51.0
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.9e-27 126.7 93 64.5
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.6e-10 70.5 46 60.9
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.8e-09 67.0 44 68.2
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 5.6e-08 62.0 43 62.8


User provided reference genes

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