Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 2010.3 1078 100.0
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1991.1 1078 98.1
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1877.4 1058 96.0
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1841.6 1073 91.4
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1620.1 1079 79.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1617.1 1079 78.0
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1613.2 1057 80.7
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1607.4 1079 79.3
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1603.6 1079 79.5
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1595.5 1077 79.6
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1590.9 1079 80.5
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1587.4 1078 76.1
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1585.1 1078 80.1
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1585.1 1078 80.0
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1583.5 1077 79.6
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1582.4 1093 78.7
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1582.0 1079 77.8
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1573.9 1079 77.9
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1573.9 1079 77.9
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1573.9 1077 77.6
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1569.3 1077 77.7
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1560.0 1078 78.2
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1560.0 1076 77.5
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1559.7 1077 77.7
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1559.3 1078 77.6
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1554.3 1080 76.0
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1550.8 1056 78.2
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1545.8 1076 77.0
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1545.8 1078 76.9
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1540.8 1080 75.6
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1539.6 1116 74.7
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1537.3 1079 76.6
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1536.9 1079 78.1
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1535.4 1076 76.2
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1532.7 1076 76.4
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1531.2 1086 76.4
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1528.5 1069 76.8
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1525.4 1074 74.6
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1525.0 1078 73.4
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1523.5 1083 73.6
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1523.5 1079 75.8
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1514.6 1098 72.1
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1512.3 1107 74.3
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1501.9 1040 76.5
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1497.6 1057 76.1
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1496.1 1079 74.9
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1492.2 1088 72.8
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1491.5 869 84.8
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 869 84.8
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 1184 70.0
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1490.3 1077 74.2
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1488.8 867 85.6
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1488.4 869 84.7
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1486.1 1078 73.6
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1486.1 1085 72.7
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1483.4 968 77.1
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1469.5 1107 72.9
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1453.3 1078 71.2
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1451.8 1094 71.0
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1443.7 1079 72.7
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1437.6 1113 68.1
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1437.2 1078 72.0
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1434.9 1081 72.4
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1434.1 1053 74.6
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1433.3 1078 72.0
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1428.3 1111 69.1
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1427.9 932 76.2
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1421.8 1081 70.2
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1421.0 933 76.0
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1416.4 932 75.8
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1408.7 1082 69.6
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1408.7 1027 72.4
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1406.7 869 81.2
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1406.7 1074 69.7
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1406.3 965 74.7
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1393.3 1098 69.3
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1391.7 933 74.9
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1391.7 933 74.9
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1390.6 933 74.8
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1388.6 1088 68.9
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1380.9 1124 69.8
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1376.7 1090 66.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 1000 70.4
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1375.1 1098 67.5
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1369.4 912 75.4
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1367.8 1067 67.9
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1367.1 1079 72.1
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1357.0 1110 67.7
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1355.1 1056 68.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1328.9 1078 66.0
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1320.1 1033 69.3
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1312.7 1182 61.3
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1309.3 1278 57.4
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1299.6 1045 66.6
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1280.8 899 72.7
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1278.5 894 71.8
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1272.7 1105 64.4
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1204.1 880 66.8
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1198.7 1068 60.4
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1177.2 891 65.0
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1130.2 871 64.2
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1100.9 692 79.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1100.5 690 79.6
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1083.2 1052 59.3
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 3.3e-278 962.2 744 63.2
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 6.4e-274 948.0 635 75.7
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 5.6e-270 934.9 690 70.1
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 4.0e-268 928.7 546 83.2
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 4.1e-252 875.5 614 71.5
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.5e-187 659.8 521 75.8
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.6e-184 651.0 570 58.8
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 9.0e-159 565.5 445 64.5
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 4.0e-151 540.0 318 83.6
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 2.2e-128 464.5 405 68.9
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.2e-126 458.8 368 60.6
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-126 456.8 470 55.1
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 7.0e-119 433.0 393 65.9
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 3.1e-95 354.4 233 76.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.6e-92 343.6 230 74.3
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.6e-91 342.0 322 58.1
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.1e-91 341.7 276 64.9
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 3.2e-87 327.8 1056 27.8
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 9.5e-84 316.2 198 79.8
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 1.4e-79 302.4 1042 25.8
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 3.8e-64 251.1 134 88.1
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 4.6e-62 244.2 190 64.2
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.2e-59 233.8 388 38.4
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.5e-54 218.0 145 71.7
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 3.5e-46 191.4 217 51.2
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.7e-45 187.2 107 86.9
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 6.7e-45 187.2 99 89.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 6.2e-43 180.6 243 49.0
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-39 169.5 108 75.0
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.4e-39 169.5 149 61.1
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.2e-38 166.4 103 72.8
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.7e-38 165.2 232 39.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 7.9e-38 163.7 237 44.7
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.9e-36 159.1 89 83.1
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.3e-35 156.4 121 63.6
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.5e-33 149.4 494 27.5
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.8e-33 147.5 119 60.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-31 143.3 215 43.7
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.5e-31 141.0 93 77.4
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 7.1e-31 140.6 215 43.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.5e-28 132.1 151 53.0
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.4e-26 126.3 284 38.7
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-25 123.2 111 61.3
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-25 123.2 111 61.3
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-25 123.2 111 61.3
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.4e-25 121.7 89 71.9
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.1e-21 107.8 79 65.8
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 4.3e-20 104.8 97 64.9
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 9.7e-20 103.6 61 82.0
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.3e-19 100.9 59 79.7
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-18 99.4 98 59.2
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.3e-18 97.8 67 67.2
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.9e-17 94.4 79 57.0
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.7e-17 94.0 134 42.5
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.8e-16 91.7 80 58.8
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 1.9e-15 89.4 51 82.4
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 2.5e-15 89.0 47 95.7
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.2e-15 88.2 61 63.9
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.7e-13 80.9 125 41.6
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 3.7e-11 75.1 76 52.6
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 6.3e-11 74.3 93 53.8
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 9.1e-10 70.5 76 50.0
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 2.6e-09 68.9 66 53.0
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 8.5e-08 63.9 262 23.7
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-07 63.5 63 49.2
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 2.5e-07 62.4 231 22.1
Glyma.18G270500 Glycine max HOM05D000415 ORTHO05D011841 1.6e-06 59.7 64 53.1
SEGI_25041 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.7e-06 58.9 47 57.4
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 4.7e-06 58.2 72 41.7
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 8.0e-06 57.4 48 52.1


User provided reference genes

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