Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1863.2 948 100.0
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1774.2 911 98.8
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1753.8 910 97.9
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 1741.9 938 93.0
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 1576.6 938 83.5
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 1575.8 937 82.5
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 1575.1 935 82.9
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 1574.7 937 82.7
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 1573.9 938 83.0
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 1573.1 936 82.4
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1572.0 936 82.7
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 1570.8 936 82.4
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1567.7 936 82.2
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 1565.1 948 81.8
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 1564.3 937 82.6
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1559.3 936 82.4
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 1558.9 936 82.6
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 1558.5 938 82.0
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1552.7 936 81.7
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 1552.0 937 81.5
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 1550.8 936 81.7
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 1550.4 937 82.4
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1548.5 936 81.7
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1547.3 935 81.7
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1542.7 936 81.0
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1542.3 938 81.7
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1541.6 936 82.2
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1540.0 938 81.6
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1540.0 936 80.9
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 1539.6 936 80.9
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1538.9 947 80.6
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1537.7 938 81.4
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1536.2 938 81.4
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 1534.2 939 81.5
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 1532.3 938 81.0
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 1528.1 938 80.7
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1526.9 938 80.8
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 1522.3 938 80.9
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 1520.0 938 80.6
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 1516.9 923 80.5
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1511.9 943 79.9
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 1509.6 937 79.6
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 1505.7 936 80.0
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 1503.0 954 79.2
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 1500.7 940 79.0
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 1499.6 935 79.5
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1496.9 941 78.6
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 1491.5 939 78.7
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 1490.7 938 79.7
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1488.0 938 77.7
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 1487.2 939 78.3
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 1484.2 939 78.2
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 1483.0 939 77.7
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 1481.8 938 78.1
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 1481.8 936 78.3
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 1480.7 940 78.8
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 1480.3 958 78.5
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1478.8 939 77.5
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 1478.0 939 78.0
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 1478.0 938 77.3
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 1477.6 939 78.2
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1475.7 939 77.4
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 1475.7 939 77.4
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1474.9 912 80.7
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1474.1 907 79.9
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1474.1 937 78.1
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1474.1 947 77.3
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 1473.4 939 78.1
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 1471.1 939 77.5
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1469.9 937 77.6
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1465.7 938 77.1
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1463.7 937 77.6
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 1457.2 939 77.1
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1449.9 935 77.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1440.6 936 77.0
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1437.6 910 78.5
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1421.4 943 75.1
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1421.0 1200 63.4
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 1399.0 941 74.4
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1390.6 1022 70.2
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1380.2 843 81.0
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1358.6 910 74.7
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1338.2 939 72.3
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1332.0 949 71.9
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1311.2 937 68.5
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1291.9 939 67.8
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1251.9 920 67.9
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1240.3 943 65.9
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1187.2 938 66.7
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1184.5 830 71.0
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 5.8e-303 1044.3 635 82.7
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 2.9e-302 1042.0 921 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 3.5e-300 1035.0 940 55.3
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 2.7e-292 1008.8 962 53.6
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 2.2e-286 989.2 606 81.4
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 1.0e-278 963.8 647 75.1
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 1.6e-276 956.4 941 51.2
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 4.3e-274 948.3 941 52.1
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.4e-243 847.0 826 56.8
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.4e-240 837.0 510 81.2
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 3.5e-239 832.4 803 57.7
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 3.0e-158 563.5 449 63.5
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 3.4e-154 550.1 334 80.8
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.3e-150 537.3 373 70.2
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.8e-139 501.1 301 79.4
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 7.2e-120 436.0 305 69.8
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 4.1e-115 420.2 409 56.2
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 3.3e-104 384.0 243 79.0
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 1.4e-102 378.6 222 84.2
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 4.9e-84 317.0 289 58.5
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.9e-83 315.1 275 60.7
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 2.5e-64 251.5 471 32.1
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.3e-64 250.8 166 74.1
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.1e-58 231.9 425 36.7
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 3.7e-55 221.1 132 79.5
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 6.2e-55 220.3 299 40.1
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 5.5e-51 207.2 127 79.5
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 1.2e-50 206.1 119 81.5
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 3.5e-50 204.5 142 68.3
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 1.3e-39 169.5 103 76.7
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 2.8e-39 168.3 161 54.7
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.4e-38 165.2 127 61.4
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 3.6e-34 151.4 98 74.5
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.3e-33 148.7 98 73.5
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.1e-30 139.8 113 61.9
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 4.5e-29 134.4 74 79.7
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.0e-28 131.0 112 53.6
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.7e-26 125.2 85 69.4
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.0e-25 123.2 74 78.4
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.0e-25 123.2 74 77.0
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.6e-24 118.6 95 56.8
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 4.4e-24 117.9 74 73.0
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 1.3e-23 116.3 74 75.7
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.8e-14 85.9 54 75.9
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.7e-07 62.8 32 87.5


User provided reference genes

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