Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 3.7e-225 784.6 418 100.0
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.5e-133 479.6 273 96.7
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 1.9e-117 426.8 354 68.1
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.3e-116 424.1 296 75.3
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 2.1e-116 423.3 237 86.5
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 4.8e-116 422.2 296 74.7
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 6.2e-116 421.8 339 66.1
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 1.1e-115 421.0 293 75.8
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.1e-115 421.0 296 72.6
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 3.4e-114 416.0 309 72.8
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.4e-112 410.6 261 72.0
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.4e-112 410.6 261 72.0
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 3.0e-110 402.9 298 71.1
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 3.0e-110 402.9 297 72.7
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.1e-109 401.0 296 72.6
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 1.1e-109 401.0 248 75.8
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 3.3e-109 399.4 298 61.7
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 3.3e-109 399.4 300 71.0
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 9.6e-109 397.9 328 60.4
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.8e-108 396.4 256 71.1
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 2.8e-108 396.4 251 74.1
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 4.8e-108 395.6 260 69.6
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 4.8e-108 395.6 305 63.0
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 6.2e-108 395.2 259 71.4
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 8.2e-108 394.8 259 71.8
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 9.0e-107 391.3 292 72.6
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.0e-106 390.2 314 68.5
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 4.5e-106 389.0 337 60.8
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 5.8e-106 388.7 294 70.4
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.7e-105 387.1 312 68.3
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 5.5e-104 382.1 309 73.5
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.2e-103 380.9 300 68.3
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 5.1e-102 375.6 300 68.0
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 6.7e-102 375.2 260 67.7
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 8.7e-102 374.8 259 67.2
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 1.5e-101 374.0 296 65.9
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 1.6e-100 370.5 253 69.2
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.6e-100 370.5 315 65.4
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.7e-100 369.4 327 63.6
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 4.8e-100 369.0 237 72.6
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.1e-99 367.9 260 65.8
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.8e-99 367.1 259 76.4
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 3.1e-99 366.3 297 58.9
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 4.1e-99 365.9 256 68.0
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 4.5e-98 362.5 239 69.0
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 5.0e-97 359.0 237 69.6
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 6.5e-97 358.6 237 70.5
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 1.1e-96 357.8 233 72.5
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 4.2e-96 355.9 288 62.5
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 4.2e-96 355.9 305 63.6
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 7.2e-96 355.1 235 71.5
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 6.3e-92 342.0 306 62.4
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.1e-91 339.7 235 66.0
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 4.1e-91 339.3 325 59.4
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 5.3e-91 339.0 239 68.2
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 2.0e-90 337.0 310 63.2
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 5.9e-90 335.5 253 58.9
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 2.9e-89 333.2 239 67.4
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.9e-89 333.2 253 73.9
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 6.5e-89 332.0 160 97.5
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 2.5e-88 330.1 346 50.0
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 1.6e-87 327.4 240 64.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 4.6e-87 325.9 295 63.1
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 1.0e-86 324.7 294 59.9
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.4e-86 324.3 194 75.8
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 8.8e-86 321.6 257 59.9
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 4.4e-85 319.3 309 61.5
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 6.3e-84 315.5 292 63.7
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 6.3e-84 315.5 295 62.7
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.1e-83 314.7 295 62.0
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.4e-83 314.3 292 63.4
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 1.8e-83 313.9 295 62.4
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 2.4e-83 313.5 295 61.4
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.1e-83 313.2 300 60.0
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 4.1e-83 312.8 295 62.4
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 5.3e-83 312.4 209 86.1
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 1.7e-81 307.4 252 58.3
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 6.1e-79 298.9 203 69.0
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 6.7e-78 295.4 265 64.5
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 6.7e-78 295.4 234 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 2.6e-77 293.5 322 54.7
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 9.7e-77 291.6 203 69.0
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 3.7e-76 289.7 231 68.8
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 2.4e-75 287.0 204 67.6
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 1.9e-72 277.3 234 59.0
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 8.8e-70 268.5 324 52.2
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 6.3e-68 262.3 281 50.9
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 1.1e-67 261.5 293 54.9
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 4.5e-66 256.1 237 54.9
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 1.7e-65 254.2 253 53.8
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 2.2e-65 253.8 294 56.1
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 1.1e-64 251.5 148 75.0
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 1.9e-64 250.8 290 54.8
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.9e-64 250.8 295 53.9
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 5.5e-64 249.2 241 63.1
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.8e-60 236.1 167 82.6
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 1.1e-56 224.9 346 46.2
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.1e-55 220.7 242 52.1
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 1.0e-54 218.4 214 53.3
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.0e-54 216.9 191 56.0
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 4.0e-54 216.5 124 79.8
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 6.8e-54 215.7 229 56.3
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 3.7e-52 209.9 136 70.6
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 8.3e-52 208.8 252 45.2
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.4e-51 208.0 295 49.2
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 2.9e-49 200.3 248 44.8
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 1.9e-48 197.6 157 65.0
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 3.0e-46 190.3 129 65.9
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 2.0e-42 177.6 137 63.5
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 9.5e-40 168.7 260 40.4
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.1e-39 167.5 185 58.9
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 2.3e-38 164.1 235 40.9
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 1.0e-33 148.7 167 61.1
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 5.0e-33 146.4 260 37.3
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 4.7e-31 139.8 255 35.7
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 5.2e-30 136.3 99 70.7
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 5.8e-29 132.9 121 57.9
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.3e-28 131.7 252 33.7
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 4.1e-27 126.7 91 67.0
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 5.4e-27 126.3 105 63.8
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.7e-26 124.0 65 96.9
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.8e-26 122.5 91 65.9
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 3.0e-25 120.6 91 63.7
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.6e-23 113.6 107 56.1
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 1.8e-22 111.3 162 55.6
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 4.1e-19 100.1 85 54.1
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 5.1e-17 93.2 71 63.4
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 4.7e-15 86.7 105 47.6
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 5.8e-13 79.7 221 29.0
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.7e-12 78.2 65 63.1
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 8.4e-12 75.9 51 68.6
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 8.7e-09 65.9 70 52.9
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 4.8e-07 60.1 51 56.9


User provided reference genes

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