Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 0.0e+00 1135.6 670 100.0
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.1e-253 877.9 682 72.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 9.9e-249 863.6 708 69.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 8.2e-235 817.4 669 67.7
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 7.2e-199 698.0 672 58.8
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 5.1e-136 489.2 599 46.9
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.5e-135 487.6 586 46.4
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 9.3e-130 468.4 669 43.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 3.5e-129 466.5 441 56.5
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 5.6e-127 459.1 462 52.6
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 6.9e-125 452.2 470 50.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.1e-122 444.9 675 41.3
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.7e-115 421.0 452 50.0
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 9.3e-114 415.2 452 49.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.2e-113 414.8 445 48.8
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.6e-113 414.5 443 49.9
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 6.1e-113 412.5 445 48.3
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.3e-112 411.4 454 47.1
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 4.3e-111 406.4 468 47.6
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.7e-111 406.0 463 47.1
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.7e-111 406.0 463 47.1
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-110 404.8 467 47.5
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.8e-109 401.0 462 47.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.2e-108 398.3 459 48.6
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.7e-107 394.4 453 46.1
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.9e-107 393.7 471 46.5
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.9e-107 393.7 446 48.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 6.5e-107 392.5 451 48.1
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 8.5e-107 392.1 445 47.0
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 5.1e-104 382.9 415 49.2
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 8.8e-104 382.1 446 44.2
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.4e-103 379.0 413 49.2
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 6.9e-101 372.5 445 44.0
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.0e-100 370.9 420 46.4
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.6e-100 370.5 445 43.8
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-99 367.9 443 46.3
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.5e-98 364.0 463 43.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.8e-94 350.5 442 45.5
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 6.3e-94 349.4 440 43.4
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 8.2e-94 349.0 432 44.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 4.1e-93 346.7 444 44.6
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.8e-91 340.1 441 43.5
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 6.5e-91 339.3 459 42.3
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 8.5e-91 339.0 450 41.3
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-90 338.6 442 42.8
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.5e-90 337.4 453 40.2
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.2e-90 337.0 463 42.3
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.4e-88 331.6 451 42.6
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.8e-88 331.3 440 42.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 3.0e-88 330.5 457 42.0
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.0e-88 330.1 448 40.0
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-87 328.6 446 41.3
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.1e-87 328.6 448 42.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.8e-86 323.2 446 40.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.8e-85 321.2 445 39.8
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.1e-85 320.5 458 39.1
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-84 318.2 445 42.7
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.9e-82 311.2 466 40.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 9.8e-79 298.9 463 40.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 6.3e-78 296.2 445 37.5
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.2e-76 292.0 450 40.0
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.2e-75 287.7 448 39.3
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.8e-75 287.0 436 39.7
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-73 281.6 402 41.3
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.7e-73 280.8 435 39.8
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.8e-72 278.1 272 50.7
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 3.0e-72 277.3 447 36.9
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.2e-72 276.6 420 37.9
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.5e-71 275.0 410 39.8
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.8e-71 272.3 404 40.1
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.7e-70 271.6 440 39.5
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.8e-70 270.8 441 39.7
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.4e-69 268.5 438 37.7
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.8e-69 268.1 404 39.6
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.1e-69 267.3 463 35.4
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 5.4e-69 266.5 439 35.5
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-68 265.0 287 46.7
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.0e-68 264.6 271 49.1
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.7e-68 264.2 271 49.1
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-67 261.9 475 34.9
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.9e-66 258.1 457 35.2
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.9e-66 258.1 457 35.2
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 5.6e-66 256.5 455 34.5
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.3e-66 256.1 447 35.1
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.6e-65 255.0 420 37.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.1e-65 254.6 422 36.5
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.1e-65 254.6 397 37.5
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 8.0e-65 252.7 438 35.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.0e-64 252.3 442 35.7
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 3.0e-64 250.8 429 35.2
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 5.2e-64 250.0 387 38.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 3.4e-63 247.3 415 35.7
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.7e-63 246.5 461 36.0
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 9.8e-63 245.7 417 36.0
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.3e-62 245.4 330 42.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.3e-62 245.4 446 34.5
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.9e-62 243.4 377 39.0
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.4e-61 241.9 278 44.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.4e-61 241.1 387 37.0
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.1e-61 240.4 434 33.6
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 5.4e-61 240.0 459 33.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.0e-61 239.6 434 33.6
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 9.2e-61 239.2 465 33.1
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.0e-60 238.0 395 35.2
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 7.8e-60 236.1 411 36.3
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.0e-59 235.7 400 35.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.5e-58 231.9 430 34.2
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.5e-58 231.1 391 36.3
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 3.3e-58 230.7 439 34.4
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.3e-58 230.3 415 34.2
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 7.3e-58 229.6 413 34.4
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 9.5e-58 229.2 469 31.6
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.2e-57 228.8 424 34.4
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.6e-57 228.4 413 34.4
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 2.1e-57 228.0 410 35.6
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.6e-57 227.3 467 31.5
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 8.0e-57 226.1 391 34.8
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.4e-56 225.3 411 33.8
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 3.1e-56 224.2 426 33.6
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 3.4e-55 220.7 475 33.1
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 4.4e-55 220.3 386 33.9
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.9e-54 217.6 370 37.0
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.1e-53 215.7 222 48.2
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.4e-53 214.5 406 32.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 2.7e-52 211.1 392 34.9
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.6e-52 210.3 235 48.1
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 3.0e-51 207.6 507 32.1
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 8.6e-51 206.1 416 34.1
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.5e-50 205.3 373 34.3
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 9.5e-50 202.6 416 33.7
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-49 201.8 276 40.9
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.4e-48 198.7 402 33.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.4e-48 198.7 412 32.3
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.0e-48 197.2 469 31.1
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.2e-47 195.7 466 30.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.9e-46 190.3 413 31.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.1e-45 189.1 293 39.2
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.4e-45 188.0 404 32.4
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.2e-45 187.6 416 32.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 7.8e-44 183.0 454 33.0
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.1e-42 179.1 442 32.1
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.5e-42 177.9 449 31.6
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.5e-42 177.9 448 31.5
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 4.3e-42 177.2 427 31.9
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 5.6e-42 176.8 452 30.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.2e-41 175.6 421 31.8
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 2.4e-37 161.4 451 30.2
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.4e-37 161.4 175 46.9
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.1e-34 152.5 192 42.7
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.3e-34 151.0 171 44.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.4e-32 144.8 261 36.0
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.0e-31 141.7 189 42.3
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 7.6e-31 139.8 417 28.5
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 1.7e-30 138.7 182 42.3
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 8.4e-30 136.3 205 39.0
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 8.4e-30 136.3 193 40.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 5.4e-29 133.7 193 40.4
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.3e-27 129.0 256 33.6
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 7.3e-26 123.2 182 42.3
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.6e-25 120.9 263 34.6
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.5e-23 115.5 415 28.2
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.5e-23 115.5 191 37.7
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.6e-23 114.8 256 31.6
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.7e-22 112.1 123 43.9
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.8e-22 110.9 287 28.2
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 3.8e-22 110.9 381 25.2
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 2.5e-18 98.2 148 38.5
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-15 89.4 117 36.8
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.2e-14 85.1 121 42.1
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 5.5e-13 80.5 148 34.5
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.6e-12 79.0 147 32.0
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.7e-12 78.2 215 30.2
Pp3c10_12370 Physcomitrium patens HOM05D003538 ORTHO05D004376 1.0e-11 76.3 471 21.0
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.3e-11 75.1 147 34.7
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 5.6e-10 70.5 496 21.2


User provided reference genes

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