Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.1e-154 550.1 298 100.0
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.6e-151 537.7 299 98.7
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.6e-151 537.7 299 98.7
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.3e-136 489.2 298 86.9
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.8e-116 421.4 301 78.7
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.9e-111 406.4 293 77.1
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 2.5e-111 406.0 302 73.2
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 3.3e-111 405.6 298 70.5
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 3.1e-109 399.1 298 72.1
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 4.4e-108 395.2 300 72.0
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-107 392.5 301 69.4
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.9e-106 389.8 298 73.2
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 2.4e-106 389.4 236 86.4
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 5.4e-106 388.3 302 72.8
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 7.1e-106 387.9 297 70.4
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 1.2e-105 387.1 298 68.1
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.6e-105 386.7 300 69.0
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-104 384.0 298 69.8
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.0e-104 384.0 302 68.2
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.3e-104 382.9 298 69.8
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.3e-104 382.9 298 69.8
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 2.3e-104 382.9 299 72.6
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.0e-104 382.5 298 69.5
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.0e-104 382.5 298 69.5
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 3.9e-104 382.1 297 67.7
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 3.9e-104 382.1 301 70.8
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 4.3e-103 378.6 301 67.1
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 7.4e-103 377.9 293 72.0
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 7.4e-103 377.9 302 67.5
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 3.6e-102 375.6 301 67.1
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 3.6e-102 375.6 297 67.7
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 3.6e-102 375.6 297 67.7
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 6.2e-102 374.8 304 67.1
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.4e-101 372.9 293 65.5
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 2.4e-101 372.9 302 70.9
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 2.4e-101 372.9 297 64.3
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.9e-101 371.3 296 66.6
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 9.0e-101 370.9 297 66.3
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-100 370.5 306 66.3
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 1.2e-100 370.5 293 67.9
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 3.4e-100 369.0 299 63.9
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 4.5e-100 368.6 294 68.7
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 4.5e-100 368.6 292 67.1
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 5.8e-100 368.2 296 65.9
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 7.6e-100 367.9 302 71.2
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.7e-99 366.7 297 66.0
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 2.9e-99 365.9 302 65.6
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 6.4e-99 364.8 299 63.9
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.4e-98 363.6 300 67.7
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.4e-98 363.6 307 64.8
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.9e-98 363.2 301 63.1
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.4e-98 362.8 303 70.0
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 3.2e-98 362.5 294 65.3
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 7.1e-98 361.3 292 66.4
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 9.3e-98 360.9 292 66.4
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 2.1e-97 359.8 295 69.8
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 2.7e-97 359.4 295 69.8
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 4.6e-97 358.6 286 62.9
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.0e-96 355.9 298 63.8
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 6.7e-96 354.8 300 63.0
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 4.3e-95 352.1 300 65.3
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 4.8e-94 348.6 290 57.9
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 6.2e-94 348.2 299 65.9
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 1.8e-93 346.7 299 60.2
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.8e-93 346.7 303 62.7
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.8e-93 346.7 295 68.1
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.2e-92 344.0 302 63.9
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 5.8e-92 341.7 300 65.3
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 5.8e-92 341.7 296 67.6
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 1.7e-91 340.1 297 63.3
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.9e-91 339.3 295 63.4
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 4.9e-91 338.6 304 59.9
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 8.4e-91 337.8 302 63.2
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.1e-90 337.4 302 61.9
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.1e-90 337.4 298 65.4
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.4e-90 337.0 286 65.4
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 4.2e-90 335.5 302 60.3
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 5.5e-90 335.1 273 62.6
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 7.1e-90 334.7 286 65.0
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.6e-89 333.6 304 61.5
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 2.1e-89 333.2 306 62.4
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.1e-89 333.2 306 60.1
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.1e-89 333.2 306 60.1
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 2.7e-89 332.8 307 62.9
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 2.7e-89 332.8 315 57.8
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 6.0e-89 331.6 289 62.6
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 6.0e-89 331.6 301 62.8
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 7.9e-89 331.3 305 62.0
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 7.9e-89 331.3 306 61.8
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.0e-88 330.9 299 64.9
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-88 330.5 305 62.0
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.8e-88 330.1 299 64.9
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 2.3e-88 329.7 306 61.1
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 8.7e-88 327.8 304 61.8
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.9e-87 326.6 291 62.9
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.9e-87 326.6 305 56.4
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 1.9e-87 326.6 256 66.4
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 4.3e-87 325.5 355 56.9
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 9.6e-87 324.3 268 69.4
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.6e-86 323.6 283 66.1
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.6e-86 323.6 299 58.5
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 6.3e-86 321.6 297 60.9
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 4.5e-84 315.5 299 62.2
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 8.4e-83 311.2 286 59.1
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.1e-82 310.8 297 53.5
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.4e-82 310.5 302 57.3
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.5e-82 309.7 297 52.9
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 2.5e-82 309.7 241 67.6
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.6e-81 307.0 278 60.4
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 4.6e-81 305.4 297 53.5
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.8e-80 303.5 297 54.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 5.1e-80 302.0 298 56.4
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.5e-79 300.4 296 59.8
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.3e-78 297.4 310 49.4
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 6.3e-78 295.0 228 74.1
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.4e-77 293.9 258 61.6
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 2.0e-76 290.0 314 53.2
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.3e-75 287.3 218 67.9
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 5.3e-69 265.4 272 55.1
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 4.1e-61 239.2 282 56.4
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 2.5e-58 229.9 283 46.3
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.6e-57 227.3 186 65.1
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 8.8e-56 221.5 305 44.3
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 8.8e-56 221.5 218 54.1
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.9e-51 206.5 216 50.5
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 1.7e-46 190.7 219 42.9
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.0e-40 169.9 201 47.8
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 3.4e-39 166.4 279 44.1
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.3e-38 164.5 182 44.0
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 5.0e-35 152.5 99 75.8
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 3.6e-33 146.4 131 58.8
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-30 136.7 132 63.6
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-30 136.7 132 63.6
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 8.6e-27 125.2 198 40.4
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 4.4e-23 112.8 68 75.0
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.8e-23 112.5 66 74.2
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 9.8e-23 111.7 197 32.5
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 4.1e-21 106.3 64 81.2
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 7.0e-21 105.5 168 35.7
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.6e-20 104.4 62 82.3
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.8e-16 90.9 75 57.3
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 9.8e-15 85.1 50 78.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 1.9e-13 80.9 94 56.4
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.4e-13 80.5 119 45.4
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.8e-12 75.5 45 71.1
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.7e-11 74.3 45 71.1
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 8.6e-11 72.0 135 41.5
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 5.6e-10 69.3 39 79.5
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 4.7e-09 66.2 43 69.8
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.4e-07 59.7 54 51.9
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 1.7e-06 57.8 116 42.2


User provided reference genes

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