Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 5.5e-34 147.1 77 100.0
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 1.8e-29 132.1 74 90.5
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 6.7e-24 113.6 59 98.3
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 2.8e-22 108.2 70 77.1
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 6.3e-22 107.1 72 76.4
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 1.1e-21 106.3 72 75.0
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 6.9e-21 103.6 79 69.6
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 6.9e-21 103.6 79 69.6
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 9.0e-21 103.2 70 77.1
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 9.0e-21 103.2 75 74.7
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 1.5e-20 102.4 73 74.0
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 2.0e-20 102.1 71 77.5
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.0e-20 102.1 73 74.0
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 2.0e-20 102.1 73 74.0
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 3.4e-20 101.3 74 74.3
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 4.5e-20 100.9 73 75.3
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 5.9e-20 100.5 74 73.0
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 5.9e-20 100.5 79 68.4
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 7.6e-20 100.1 73 72.6
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.7e-19 99.0 74 73.0
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 2.2e-19 98.6 79 69.6
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 2.2e-19 98.6 75 70.7
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 2.9e-19 98.2 67 77.6
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 2.9e-19 98.2 75 73.3
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 1.9e-18 95.5 79 69.6
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 9.3e-18 93.2 74 67.6
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 1.8e-16 89.0 70 62.9
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 1.8e-16 89.0 77 64.9
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 5.1e-16 87.4 72 66.7
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 6.7e-16 87.0 70 64.3
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 1.5e-15 85.9 76 64.5
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.9e-15 85.5 78 61.5
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.9e-15 85.5 78 61.5
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 2.5e-15 85.1 76 64.5
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.5e-15 85.1 78 60.3
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 3.3e-15 84.7 76 63.2
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 4.3e-15 84.3 78 60.3
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 4.3e-15 84.3 78 60.3
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 4.3e-15 84.3 78 60.3
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 4.3e-15 84.3 74 62.2
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 5.7e-15 84.0 77 64.9
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 5.7e-15 84.0 73 67.1
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 2.8e-14 81.6 73 64.4
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 6.3e-14 80.5 76 63.2
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 8.2e-14 80.1 74 64.9
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 1.8e-13 79.0 79 58.2
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 2.4e-13 78.6 69 59.4
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 2.4e-13 78.6 77 58.4
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 3.1e-13 78.2 81 59.3
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 3.1e-13 78.2 81 59.3
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 3.1e-13 78.2 76 61.8
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 3.1e-13 78.2 76 61.8
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 5.3e-13 77.4 75 57.3
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 6.9e-13 77.0 59 69.5
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 9.1e-13 76.6 74 62.2
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 1.5e-12 75.9 74 62.2
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 2.6e-12 75.1 75 64.0
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 5.9e-12 73.9 74 59.5
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 1.7e-11 72.4 73 61.6
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 2.2e-11 72.0 75 58.7
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 5.0e-11 70.9 73 60.3
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 5.0e-11 70.9 73 60.3
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 6.5e-11 70.5 76 59.2
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 6.5e-11 70.5 73 58.9
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 1.4e-10 69.3 74 55.4
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 7.2e-10 67.0 55 70.9
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 2.1e-09 65.5 69 53.6
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 2.1e-09 65.5 66 56.1
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 2.7e-09 65.1 73 53.4
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 3.6e-09 64.7 76 53.9
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 3.6e-09 64.7 76 53.9
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 3.6e-09 64.7 70 54.3
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 1.8e-08 62.4 69 52.2
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 5.1e-08 60.8 76 52.6
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 5.1e-08 60.8 76 51.3
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 6.7e-08 60.5 66 56.1
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 6.7e-08 60.5 48 66.7
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 1.5e-07 59.3 71 50.7
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 1.5e-07 59.3 77 53.2
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 2.0e-07 58.9 54 63.0
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 4.4e-07 57.8 70 50.0
SEGI_13362 Sequoiadendron giganteum HOM05D007850 ORTHO05D009594 4.8e-06 54.3 52 51.9


User provided reference genes

Program Settings