Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.6e-54 214.5 100 100.0
CsaV3_1G038050 Cucumis sativus L. HOM05D002165 ORTHO05D001531 3.2e-50 201.4 99 97.0
ClCG03G017890 Citrullus lanatus HOM05D002165 ORTHO05D001531 6.0e-41 170.6 102 83.3
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 3.9e-32 141.4 95 75.8
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 4.3e-31 137.9 99 71.7
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 9.0e-29 130.2 95 71.6
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.7e-27 125.9 96 65.6
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.9e-27 125.2 96 66.7
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 5.4e-26 120.9 97 67.0
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 5.4e-26 120.9 97 67.0
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 5.4e-26 120.9 97 67.0
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 9.3e-26 120.2 95 69.5
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 7.8e-25 117.1 96 60.4
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.3e-24 116.3 95 63.2
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 5.1e-24 114.4 97 66.0
MELO3C025021.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.1e-23 113.2 95 67.4
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 4.3e-23 111.3 99 61.6
CsaV3_6G002650 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.8e-22 108.6 97 61.9
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 6.2e-22 107.5 91 57.1
CsaV3_6G002620 Cucumis sativus L. HOM05D002165 ORTHO05D001531 5.3e-21 104.4 72 69.4
Sed0027158 Sechium edule HOM05D002165 ORTHO05D001531 1.5e-20 102.8 99 55.6
ClCG08G002340 Citrullus lanatus HOM05D002165 ORTHO05D001531 4.5e-20 101.3 97 56.7
ClCG08G002330 Citrullus lanatus HOM05D002165 ORTHO05D001531 9.9e-20 100.1 97 55.7
ClCG08G002370 Citrullus lanatus HOM05D002165 ORTHO05D001531 9.9e-20 100.1 97 55.7
Sed0012842 Sechium edule HOM05D002165 ORTHO05D001531 1.6e-17 92.8 91 52.7
ClCG08G002300 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.1e-17 92.4 59 72.9
Sed0013340 Sechium edule HOM05D002165 ORTHO05D001531 2.1e-17 92.4 101 52.5
ClCG08G002280 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-16 89.7 95 54.7
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 2.1e-14 82.4 97 51.5
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 3.7e-14 81.6 96 50.0
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 3.7e-14 81.6 96 50.0
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.8e-14 81.3 96 50.0
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 6.2e-14 80.9 93 47.3
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.1e-13 80.1 96 50.0
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.1e-13 80.1 96 50.0
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.4e-13 79.0 93 45.2
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 6.9e-13 77.4 97 48.5
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 1.2e-12 76.6 96 50.0
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 2.0e-12 75.9 93 45.2
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 2.6e-12 75.5 97 47.4
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 4.5e-12 74.7 93 46.2
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 1.3e-11 73.2 93 43.0
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 1.3e-11 73.2 93 43.0
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-11 72.4 92 45.7
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 3.8e-11 71.6 96 44.8
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.9e-11 71.2 103 40.8
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 8.4e-11 70.5 94 43.6
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 8.4e-11 70.5 96 49.0
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.1e-10 70.1 88 43.2
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.4e-10 69.7 92 46.7
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 1.9e-10 69.3 92 43.5
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 1.9e-10 69.3 92 43.5
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 1.9e-10 69.3 92 43.5
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.9e-10 69.3 92 42.4
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.9e-10 69.3 99 44.4
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 46.7
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 43.5
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 43.5
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 46.7
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 43.5
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 46.7
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 43.5
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 46.7
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 2.5e-10 68.9 92 46.7
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 2.5e-10 68.9 86 48.8
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 3.2e-10 68.6 93 44.1
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.2e-10 68.6 95 42.1
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 4.2e-10 68.2 92 43.5
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 4.2e-10 68.2 92 43.5
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 4.2e-10 68.2 90 46.7
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.2e-10 68.2 95 42.1
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 4.2e-10 68.2 95 44.2
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 5.5e-10 67.8 93 45.2
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 5.5e-10 67.8 92 42.4
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 5.5e-10 67.8 92 42.4
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 5.5e-10 67.8 93 45.2
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 5.5e-10 67.8 93 45.2
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 5.5e-10 67.8 92 42.4
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.5e-10 67.8 93 43.0
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.5e-10 67.8 93 43.0
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 5.5e-10 67.8 91 46.2
Sed0016802 Sechium edule HOM05D002165 ORTHO05D001531 7.1e-10 67.4 90 47.8
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 9.3e-10 67.0 94 44.7
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 9.3e-10 67.0 92 42.4
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 9.3e-10 67.0 92 42.4
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 9.3e-10 67.0 92 41.3
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.2e-09 66.6 94 43.6
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-09 66.2 93 44.1
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-09 66.2 93 44.1
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 1.6e-09 66.2 93 44.1
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.6e-09 66.2 79 45.6
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-09 66.2 95 37.9
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.6e-09 66.2 93 41.9
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 2.7e-09 65.5 88 44.3
Thecc.05G329700 Theobroma cacao HOM05D002165 ORTHO05D001531 2.7e-09 65.5 86 47.7
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 3.5e-09 65.1 87 47.1
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 4.6e-09 64.7 86 47.7
ClCG02G014640 Citrullus lanatus HOM05D002165 ORTHO05D001531 6.0e-09 64.3 76 48.7
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 6.0e-09 64.3 89 43.8
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.0e-09 64.3 91 42.9
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.0e-09 64.3 94 38.3
Medtr0187s0020 Medicago truncatula HOM05D008018 ORTHO05D001531 7.9e-09 63.9 90 43.3
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.0e-08 63.5 94 41.5
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.0e-08 63.5 91 42.9
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 1.3e-08 63.2 92 45.7
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 1.8e-08 62.8 93 41.9
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.0e-08 62.0 83 44.6
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 3.9e-08 61.6 68 45.6
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.9e-08 61.6 94 39.4
Psat6g154200 Pisum sativum HOM05D008018 ORTHO05D001531 3.9e-08 61.6 91 42.9
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 5.1e-08 61.2 79 49.4
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 5.1e-08 61.2 90 44.4
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 5.1e-08 61.2 93 41.9
Medtr1g084840 Medicago truncatula HOM05D008018 ORTHO05D001531 6.7e-08 60.8 86 43.0
Medtr1g484990 Medicago truncatula HOM05D008018 ORTHO05D001531 6.7e-08 60.8 92 42.4
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 6.7e-08 60.8 93 41.9
Gohir.A13G177800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 8.7e-08 60.5 86 43.0
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 8.7e-08 60.5 91 45.1
Prupe.4G278700 Prunus persica HOM05D002165 ORTHO05D001531 8.7e-08 60.5 83 47.0
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 1.1e-07 60.1 88 45.5
Medtr1g485020 Medicago truncatula HOM05D008018 ORTHO05D001531 1.1e-07 60.1 91 41.8
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 1.1e-07 60.1 69 50.7
Psat6g154080 Pisum sativum HOM05D008018 ORTHO05D001531 1.1e-07 60.1 91 41.8
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.5e-07 59.7 52 53.8
ECA240G3242 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.5e-07 59.7 86 46.5
Medtr0187s0050 Medicago truncatula HOM05D008018 ORTHO05D001531 1.5e-07 59.7 91 42.9
Medtr0187s0070 Medicago truncatula HOM05D008018 ORTHO05D001531 1.5e-07 59.7 91 42.9
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 1.5e-07 59.7 97 38.1
Gohir.D13G184400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.9e-07 59.3 86 40.7
Gorai.013G210100 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.9e-07 59.3 86 40.7
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 2.5e-07 58.9 88 46.6
Nitab4.5_0005662g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 2.5e-07 58.9 67 52.2
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 3.3e-07 58.5 67 49.3
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 3.3e-07 58.5 90 41.1
Medtr1g084920 Medicago truncatula HOM05D008018 ORTHO05D001531 3.3e-07 58.5 92 41.3
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 3.3e-07 58.5 60 48.3
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.7e-07 57.8 90 40.0
TPR.G2624 Trifolium pratense HOM05D008018 ORTHO05D001531 7.4e-07 57.4 92 39.1
Nitab4.5_0002516g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 9.6e-07 57.0 67 52.2
Solyc01g101260.2 Solanum lycopersicum HOM05D002165 ORTHO05D001531 9.6e-07 57.0 65 50.8
Sopen01g044710 Solanum pennellii HOM05D002165 ORTHO05D001531 9.6e-07 57.0 65 50.8
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 1.3e-06 56.6 83 41.0
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 1.3e-06 56.6 94 42.6
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.3e-06 56.6 92 38.0
Ah.06g190740 Amaranthus hybridus HOM05D002165 ORTHO05D001531 1.6e-06 56.2 78 43.6
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-06 56.2 83 41.0
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-06 56.2 83 41.0
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 1.6e-06 56.2 83 41.0
Lalb_Chr21g0310041 Lupinus albus HOM05D008018 ORTHO05D001531 1.6e-06 56.2 89 37.1
CiPaw.02G068700 Carya illinoinensis HOM05D002165 ORTHO05D001531 2.1e-06 55.8 93 37.6
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.1e-06 55.8 74 41.9
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.1e-06 55.8 56 48.2
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 2.1e-06 55.8 87 44.8
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.1e-06 55.8 92 41.3
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 2.8e-06 55.5 81 45.7
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 2.8e-06 55.5 83 39.8
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 2.8e-06 55.5 81 42.0
Lalb_Chr07g0181571 Lupinus albus HOM05D002165 ORTHO05D001531 2.8e-06 55.5 90 37.8
Psat6g154040 Pisum sativum HOM05D008018 ORTHO05D001531 2.8e-06 55.5 98 33.7
Psat6g156960 Pisum sativum HOM05D008018 ORTHO05D001531 2.8e-06 55.5 87 41.4
TPR.G2630 Trifolium pratense HOM05D008018 ORTHO05D001531 2.8e-06 55.5 88 38.6
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 3.7e-06 55.1 81 40.7
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 3.7e-06 55.1 81 40.7
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 3.7e-06 55.1 93 41.9
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 3.7e-06 55.1 93 41.9
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 3.7e-06 55.1 93 41.9
Psat6g153800 Pisum sativum HOM05D008018 ORTHO05D001531 3.7e-06 55.1 89 40.4
Psat6g154160 Pisum sativum HOM05D008018 ORTHO05D001531 3.7e-06 55.1 87 41.4
CAN.G1248.15 Capsicum annuum HOM05D002165 ORTHO05D001531 4.8e-06 54.7 65 49.2
Lalb_Chr02g0147521 Lupinus albus HOM05D008018 ORTHO05D001531 4.8e-06 54.7 96 37.5
Medtr0187s0030 Medicago truncatula HOM05D008018 ORTHO05D001531 4.8e-06 54.7 90 42.2
Medtr0187s0060 Medicago truncatula HOM05D008018 ORTHO05D001531 4.8e-06 54.7 90 42.2
Oeu062787.1 Olea europaea HOM05D002165 ORTHO05D001531 4.8e-06 54.7 78 48.7
ECA240G3359 Erigeron canadensis HOM05D002165 ORTHO05D001531 6.2e-06 54.3 79 45.6
Eucgr.L03552 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.2e-06 54.3 86 39.5
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 6.2e-06 54.3 93 38.7
TPR.G18867 Trifolium pratense HOM05D008018 ORTHO05D001531 6.2e-06 54.3 88 39.8
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 8.2e-06 53.9 79 40.5
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 8.2e-06 53.9 75 46.7
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 8.2e-06 53.9 87 44.8
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 8.2e-06 53.9 87 44.8


User provided reference genes

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