Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1919.8 984 100.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1749.2 911 97.6
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1588.5 920 87.6
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1414.4 917 78.7
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1411.4 938 76.9
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1388.6 960 74.1
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1335.5 927 74.9
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1331.6 916 74.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1327.8 914 74.4
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1322.0 916 75.1
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1318.9 914 73.1
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1318.1 943 72.1
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1317.8 918 73.6
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1315.8 923 72.3
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1312.0 923 72.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1310.4 912 73.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1309.7 797 82.1
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1309.3 915 72.7
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1296.2 920 71.8
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1293.1 923 72.3
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1291.6 910 72.7
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1290.0 910 72.2
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 873 75.7
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 902 72.5
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1280.4 914 70.1
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1278.5 927 71.1
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 882 74.0
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1264.2 917 70.6
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1264.2 988 67.9
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1260.4 911 71.1
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1253.8 911 69.9
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1253.4 914 69.0
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1249.6 908 69.8
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1248.8 920 70.3
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1246.1 920 69.3
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1243.8 898 71.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1243.0 920 69.3
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1239.9 896 71.3
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1228.8 1017 64.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1228.4 898 70.6
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1227.2 910 69.5
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1224.9 898 70.4
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1224.9 898 70.4
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1222.2 907 69.5
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1215.7 899 70.2
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1214.9 910 67.7
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1204.9 905 67.8
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1202.6 931 67.7
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1201.4 898 69.8
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1200.3 926 66.8
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1198.7 918 67.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1192.2 832 70.7
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1191.4 891 68.9
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1189.5 899 67.4
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1186.4 828 70.5
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1184.9 914 65.0
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1184.5 909 65.2
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1181.8 908 65.3
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1181.4 873 68.8
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1181.4 917 67.1
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1181.0 921 66.9
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1175.2 875 67.9
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1173.7 912 65.9
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1172.9 869 68.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1171.4 888 67.2
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1169.1 913 64.3
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1168.7 882 67.0
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1164.8 938 63.3
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1162.5 913 65.2
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1162.5 887 66.3
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1162.1 934 65.3
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1161.4 828 69.6
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1160.6 904 67.5
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1156.0 923 65.1
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1152.5 896 66.1
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1152.5 863 66.6
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1152.1 863 66.6
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1151.7 910 64.7
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1146.7 919 65.1
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1146.3 925 64.3
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1144.4 917 66.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1144.0 873 65.9
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1143.3 855 66.5
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1143.3 968 62.4
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1142.9 925 64.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1142.1 910 64.2
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1141.7 855 66.5
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1139.8 903 64.9
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1134.4 884 67.3
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1131.3 867 65.9
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1119.0 907 62.8
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1110.1 918 64.9
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1108.2 915 64.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1107.8 917 63.4
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1104.0 1000 58.6
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1086.6 837 67.7
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1080.1 833 63.5
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 5.3e-307 1057.7 983 57.4
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.4e-306 1055.0 676 77.5
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 2.9e-305 1052.0 876 61.9
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 3.0e-302 1042.0 903 58.3
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 4.2e-296 1021.5 941 57.7
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.2e-295 1020.0 896 58.9
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 6.3e-292 1007.7 899 57.0
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.6e-282 975.7 782 64.2
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 3.4e-274 948.7 835 58.8
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.4e-272 943.3 706 70.1
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.1e-264 917.1 870 55.4
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 2.5e-256 889.4 882 55.7
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 7.2e-248 861.3 899 50.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 7.3e-240 834.7 883 49.2
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.6e-231 807.0 544 75.0
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.6e-231 807.0 544 75.0
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.1e-230 802.7 843 48.2
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 4.7e-223 778.9 848 47.4
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.6e-215 752.7 402 95.0
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 4.2e-179 632.9 857 42.1
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 4.6e-178 629.4 455 70.3
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.0e-137 493.8 365 68.2
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 5.2e-97 360.1 397 50.9
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 3.2e-62 244.6 201 60.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.0e-60 238.0 603 28.0
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 3.8e-55 221.1 146 71.2
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 4.1e-49 201.1 165 61.2
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 5.3e-49 200.7 170 62.4
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.5e-40 171.0 173 54.3
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.4e-38 166.0 391 30.2
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 2.1e-37 162.2 164 53.0
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 2.2e-34 152.1 617 23.7
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.8e-33 149.1 170 51.2
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.5e-30 139.4 128 64.1
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.7e-27 126.7 121 55.4
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.7e-18 99.4 95 50.5
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.8e-17 95.9 293 27.0
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.7e-16 92.0 104 43.3
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 8.6e-15 87.0 272 29.0
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 8.6e-15 87.0 74 62.2
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 6.8e-12 77.4 68 58.8
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.4e-09 68.9 115 39.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.0e-07 63.5 50 46.0
MELO3C033873.2 Cucumis melo HOM05D004682 ORTHO05D169254 3.9e-07 61.6 63 60.3
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 5.0e-07 61.2 82 41.5
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.5e-06 59.7 48 62.5
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 4.3e-06 58.2 50 54.0


User provided reference genes

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