Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 3.2e-104 381.7 186 100.0
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 2.1e-103 379.0 186 98.9
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 7.8e-103 377.1 185 98.4
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 4.0e-99 364.8 186 94.1
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.0e-94 348.6 186 87.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.1e-93 346.7 186 87.6
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.5e-93 346.3 186 88.7
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.9e-93 345.9 186 86.6
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.5e-93 345.5 186 86.6
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 3.3e-93 345.1 186 87.6
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 4.3e-93 344.7 186 87.6
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.3e-92 343.2 184 87.5
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.3e-92 343.2 186 85.5
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 1.6e-92 342.8 186 86.6
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.6e-92 342.8 186 87.6
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 2.8e-92 342.0 186 84.9
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 4.8e-92 341.3 182 87.4
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 8.1e-92 340.5 186 86.0
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 8.1e-92 340.5 186 85.5
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 84.9
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.4e-91 339.7 186 86.6
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 2.4e-91 339.0 186 85.5
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 86.6
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 84.9
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 4.0e-91 338.2 186 84.9
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 4.0e-91 338.2 186 84.9
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.0e-91 338.2 186 84.4
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 6.9e-91 337.4 186 83.9
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.2e-90 336.7 186 84.4
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.2e-90 336.7 185 84.9
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 83.3
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 2.0e-90 335.9 185 83.8
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 83.3
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 2.6e-90 335.5 185 85.9
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 85.5
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 83.9
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 85.5
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 83.3
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 83.9
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 5.8e-90 334.3 184 83.7
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 84.9
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 7.6e-90 334.0 185 82.7
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 1.3e-89 333.2 181 85.1
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 84.4
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 82.8
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 81.7
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 81.7
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 84.9
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 3.8e-89 331.6 178 86.5
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 6.4e-89 330.9 174 89.1
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 6.4e-89 330.9 185 82.2
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 8.4e-89 330.5 185 83.2
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 8.4e-89 330.5 186 83.9
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.4e-88 329.7 184 83.2
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 181 84.5
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.9e-88 329.3 186 83.9
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 3.2e-88 328.6 184 83.2
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.2e-88 328.6 184 83.2
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 4.2e-88 328.2 186 82.8
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 4.2e-88 328.2 185 82.7
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 5.4e-88 327.8 184 82.6
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 7.1e-88 327.4 186 81.2
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 184 82.1
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 81.2
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 181 83.4
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 184 82.1
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 184 82.6
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.6e-87 326.2 182 82.4
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.1e-87 325.9 186 81.7
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 181 82.3
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 2.1e-87 325.9 186 80.1
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.7e-87 325.5 181 82.3
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 3.5e-87 325.1 181 81.8
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 4.6e-87 324.7 181 82.3
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 6.0e-87 324.3 181 81.8
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 6.0e-87 324.3 186 81.7
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 7.9e-87 323.9 181 81.8
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 7.9e-87 323.9 181 82.3
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 7.9e-87 323.9 182 84.6
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 81.5
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 1.3e-86 323.2 184 81.5
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.8e-86 322.8 184 80.4
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.8e-86 322.8 182 81.9
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.8e-86 322.8 184 81.5
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.8e-86 322.8 182 81.9
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 3.0e-86 322.0 181 81.8
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.0e-86 322.0 184 82.1
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.0e-86 322.0 186 80.6
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 5.1e-86 321.2 184 79.9
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 6.7e-86 320.9 181 80.1
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 6.7e-86 320.9 181 81.2
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 6.7e-86 320.9 181 80.1
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 6.7e-86 320.9 181 80.1
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.5e-85 319.7 181 80.1
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 1.5e-85 319.7 181 79.6
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.9e-85 319.3 181 79.6
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 2.5e-85 318.9 186 81.7
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 4.8e-84 314.7 181 79.6
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 4.8e-84 314.7 181 79.6
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 8.1e-84 313.9 186 79.6
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 1.1e-83 313.5 186 75.8
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.8e-83 312.8 186 79.0
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 5.3e-83 311.2 172 84.3
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 4.5e-82 308.1 181 77.3
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 2.9e-81 305.4 186 80.1
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.9e-80 302.8 185 76.2
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 2.4e-80 302.4 181 77.3
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 1.6e-79 299.7 186 76.9
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 3.5e-79 298.5 186 74.7
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 4.6e-79 298.1 181 76.2
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.8e-78 296.2 186 74.7
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 8.7e-78 293.9 186 74.2
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 1.1e-77 293.5 186 73.7
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 7.4e-77 290.8 186 72.0
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 7.4e-77 290.8 186 72.6
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 1.3e-76 290.0 186 72.6
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.6e-76 289.7 173 77.5
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 8.2e-76 287.3 184 72.3
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 9.0e-75 283.9 186 71.5
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 3.9e-70 268.5 186 66.1
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 6.7e-62 241.1 181 54.7
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 2.6e-58 229.2 181 55.8
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.2e-56 222.2 189 54.5
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.3e-54 216.1 172 62.8
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 2.3e-54 216.1 177 52.0
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.7e-53 211.5 183 50.8
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 1.7e-52 209.9 175 53.1
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.3e-44 183.7 151 55.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 7.0e-43 177.9 180 51.1
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 5.2e-38 161.8 88 88.6
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 9.1e-35 151.0 194 44.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 9.1e-27 124.4 90 64.4
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.6e-23 113.6 155 35.5
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 7.0e-19 98.2 54 81.5
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 4.3e-08 62.4 88 37.5


User provided reference genes

Program Settings