Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.1e-124 449.9 223 100.0
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.8e-99 365.5 182 97.8
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 8.0e-94 347.4 182 94.5
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 3.2e-79 298.9 183 82.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 5.7e-68 261.5 186 71.0
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.6e-65 253.4 187 69.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.7e-65 252.7 186 67.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 5.9e-65 251.5 187 69.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.0e-64 250.8 186 66.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.3e-64 250.4 186 67.7
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.7e-64 250.0 186 67.7
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.0e-64 249.2 187 68.4
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.0e-64 249.2 186 65.6
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 6.6e-64 248.1 186 66.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.5e-63 246.9 189 68.3
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.5e-63 246.9 186 68.3
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.9e-63 246.5 182 67.0
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.5e-63 246.1 186 66.7
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.5e-63 246.1 187 66.8
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 9.5e-63 244.2 186 67.2
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.6e-62 243.4 187 67.4
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.6e-62 243.4 186 65.1
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.1e-62 243.0 183 67.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 6.2e-62 241.5 186 65.6
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.0e-62 241.1 183 67.2
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-61 240.4 188 65.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.4e-61 240.4 183 67.2
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.3e-61 239.6 183 66.7
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.3e-61 239.6 187 64.2
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 2.3e-61 239.6 186 66.1
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.3e-61 239.6 185 65.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.1e-61 239.2 183 66.7
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.0e-61 238.8 183 66.7
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.0e-61 238.8 187 64.7
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.0e-61 238.8 187 64.7
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 5.2e-61 238.4 182 63.2
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.2e-61 238.4 187 63.6
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 6.8e-61 238.0 185 66.5
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.6e-60 236.1 186 63.4
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.3e-59 233.8 187 65.8
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.7e-59 233.4 182 65.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.7e-59 233.4 188 65.4
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 3.7e-59 232.3 182 64.3
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 4.9e-59 231.9 187 63.6
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 6.4e-59 231.5 183 64.5
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.4e-59 231.5 192 61.5
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 6.4e-59 231.5 187 64.7
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.1e-58 230.7 189 63.5
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.2e-57 227.3 223 55.2
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.2e-57 227.3 186 60.2
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.5e-57 225.7 186 61.8
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 4.6e-57 225.3 193 62.7
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 6.0e-57 224.9 184 64.1
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.8e-57 224.6 182 63.7
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.0e-56 224.2 182 62.6
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.0e-56 222.6 185 62.2
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.9e-56 222.2 201 57.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.9e-55 219.9 182 61.5
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.5e-55 219.5 189 62.4
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 5.6e-55 218.4 186 57.0
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.6e-55 218.4 183 62.3
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.6e-54 216.9 185 61.1
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 8.9e-53 211.1 187 59.4
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.5e-52 210.3 195 59.5
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 2.6e-52 209.5 183 57.4
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 4.4e-52 208.8 203 56.7
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.7e-51 206.8 184 58.7
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.2e-51 206.5 185 58.4
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 3.7e-51 205.7 185 59.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 4.9e-51 205.3 182 57.7
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.1e-50 204.1 192 57.3
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.4e-50 203.0 188 59.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 3.2e-50 202.6 183 60.1
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 5.4e-50 201.8 182 57.1
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.1e-50 201.4 185 59.5
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.2e-49 200.7 185 58.9
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.6e-49 200.3 178 57.9
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.6e-49 200.3 186 59.7
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.6e-49 198.7 186 57.5
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.6e-49 198.7 186 59.7
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.6e-49 198.7 189 59.8
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 7.8e-49 198.0 183 56.3
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.0e-48 197.6 201 53.2
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.0e-48 197.6 183 56.3
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.3e-48 197.2 182 55.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.3e-48 197.2 188 59.0
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 2.3e-48 196.4 185 55.7
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 3.9e-48 195.7 182 54.4
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 5.1e-48 195.3 184 56.0
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 8.6e-48 194.5 165 60.0
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.1e-47 194.1 185 54.6
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.5e-47 193.7 183 55.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.3e-47 192.6 184 57.6
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.3e-47 192.2 185 56.2
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 9.5e-47 191.0 189 52.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.1e-46 189.9 182 55.5
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.1e-46 189.9 182 57.1
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.1e-46 189.9 182 57.1
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.8e-46 189.5 183 55.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.6e-46 189.1 189 55.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.7e-46 188.7 187 54.0
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 8.1e-46 188.0 182 53.3
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 8.1e-46 188.0 186 54.3
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.4e-45 187.2 186 56.5
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 2.3e-45 186.4 182 53.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-44 184.1 182 50.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-44 183.7 182 50.5
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-44 183.7 182 50.0
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.5e-44 183.7 182 50.5
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.4e-44 182.6 127 69.3
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.4e-44 182.2 187 54.5
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 9.9e-44 181.0 182 51.1
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.3e-43 180.6 182 50.5
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.2e-43 179.9 182 51.1
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.2e-43 179.9 203 50.2
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 2.9e-43 179.5 182 51.1
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 2.9e-43 179.5 183 55.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 3.8e-43 179.1 193 50.8
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 8.4e-43 177.9 182 48.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 8.4e-43 177.9 182 50.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.1e-42 177.6 183 51.9
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 5.4e-42 175.3 182 55.5
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 7.1e-42 174.9 196 46.4
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.8e-41 171.4 185 54.1
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 7.8e-41 171.4 193 48.2
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-40 170.6 182 50.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.7e-40 170.2 161 55.9
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.0e-40 169.5 184 49.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 6.6e-40 168.3 195 47.2
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.5e-39 167.2 180 50.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 4.3e-39 165.6 168 54.2
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.6e-39 165.2 204 45.1
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 5.6e-39 165.2 164 50.0
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 5.6e-39 165.2 214 48.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 9.6e-39 164.5 208 46.6
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.6e-38 163.7 163 48.5
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.1e-37 161.0 168 48.2
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.4e-37 160.6 188 47.3
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 4.0e-37 159.1 186 47.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.0e-37 159.1 105 72.4
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 8.9e-37 157.9 187 47.1
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.2e-36 157.5 187 46.0
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.0e-36 156.8 187 46.0
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.0e-36 156.8 187 45.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.4e-36 155.6 200 45.0
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 4.4e-36 155.6 112 65.2
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 7.6e-36 154.8 182 48.4
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.2e-35 153.3 193 45.1
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.8e-35 152.5 175 47.4
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.4e-34 149.8 138 56.5
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.2e-33 147.5 185 47.6
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.7e-33 146.4 91 72.5
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.6e-33 145.6 103 64.1
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 7.8e-33 144.8 110 62.7
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.3e-32 144.1 103 64.1
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.7e-32 143.7 165 50.9
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.9e-32 142.5 209 44.5
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 8.7e-32 141.4 185 44.3
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 8.7e-32 141.4 108 59.3
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 8.7e-32 141.4 109 62.4
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 7.3e-31 138.3 189 43.4
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.1e-30 136.7 96 65.6
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 3.6e-30 136.0 183 43.2
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.0e-28 130.2 184 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.6e-28 129.8 98 60.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 4.5e-28 129.0 91 59.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 7.1e-26 121.7 184 46.2
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.9e-24 115.9 113 56.6
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 5.6e-23 112.1 71 66.2
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 3.6e-22 109.4 182 39.6
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 3.6e-22 109.4 107 52.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.8e-22 109.0 75 68.0
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-19 100.5 198 36.9
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.7e-19 100.5 198 36.9
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.9e-16 89.4 182 34.6
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.1e-10 71.2 41 80.5
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 6.7e-08 62.0 134 36.6


User provided reference genes

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