Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 0.0e+00 1258.8 656 100.0
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 0.0e+00 1234.9 656 97.7
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 0.0e+00 1151.3 656 91.9
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 3.9e-306 1054.3 618 88.7
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.4e-247 859.8 654 67.7
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.0e-245 853.6 652 67.6
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 6.5e-245 850.9 664 66.4
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.1e-244 850.1 650 67.2
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.9e-244 849.4 666 66.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 7.2e-244 847.4 673 65.8
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 7.2e-244 847.4 655 66.3
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.2e-243 846.7 658 66.9
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 4.7e-243 844.7 669 65.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-242 843.2 670 65.7
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 3.0e-242 842.0 652 66.9
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 6.7e-242 840.9 663 66.4
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.5e-241 839.7 649 65.6
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.6e-241 839.0 672 63.5
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.7e-240 836.3 664 63.6
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.8e-240 834.7 664 66.0
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.4e-239 833.2 660 66.1
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.4e-239 833.2 660 65.9
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-239 832.8 635 67.6
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.1e-239 830.5 619 68.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.5e-238 828.2 667 64.6
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.3e-237 826.6 653 66.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.5e-236 822.4 644 65.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.1e-235 819.3 666 64.7
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.7e-235 818.9 705 61.8
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.0e-235 817.4 651 66.1
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.8e-234 816.2 661 64.4
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.0e-234 815.1 653 64.3
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.2e-233 813.5 647 64.3
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.0e-233 812.8 645 65.4
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.4e-233 812.0 650 63.7
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 9.8e-233 810.4 643 63.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 3.7e-232 808.5 646 63.8
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 8.3e-232 807.4 651 63.4
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.8e-231 806.2 647 63.7
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.8e-231 806.2 651 63.6
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-231 805.8 643 63.6
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.2e-230 803.5 706 60.6
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.6e-230 803.1 646 63.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 5.2e-226 788.1 664 61.0
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.5e-225 786.6 653 62.3
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.7e-225 784.6 661 61.6
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.7e-224 783.1 649 61.6
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 2.8e-224 782.3 667 61.2
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 6.3e-224 781.2 647 61.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 5.4e-223 778.1 650 62.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 9.2e-223 777.3 661 62.8
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.6e-222 776.5 646 61.5
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.0e-221 773.9 677 59.2
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.9e-221 772.3 652 61.5
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-221 771.9 652 61.3
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.5e-220 770.0 652 61.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 8.0e-219 764.2 656 61.4
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.1e-218 762.3 662 62.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 5.2e-218 761.5 668 59.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.6e-217 759.2 646 60.7
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.3e-216 756.9 675 59.9
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.2e-216 756.1 643 60.3
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 4.1e-215 751.9 676 59.5
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 5.4e-215 751.5 643 60.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.0e-214 749.6 673 58.5
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.6e-214 748.4 586 63.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 6.6e-213 744.6 647 59.5
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 4.3e-212 741.9 642 60.3
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 7.3e-212 741.1 652 58.6
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 9.5e-212 740.7 642 60.1
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.6e-211 740.0 667 58.6
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.1e-211 739.6 654 57.3
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 4.7e-211 738.4 639 58.8
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.1e-210 737.3 643 59.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.3e-210 736.1 642 58.7
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 3.1e-210 735.7 643 58.9
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 3.4e-209 732.3 639 58.5
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 3.4e-209 732.3 639 58.5
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 7.5e-209 731.1 643 58.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.7e-208 728.8 662 58.6
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 4.9e-208 728.4 654 58.3
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.1e-207 727.2 667 58.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.4e-207 726.1 643 58.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 5.1e-205 718.4 643 58.8
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 8.6e-205 717.6 676 56.7
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-204 717.2 629 58.3
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.1e-204 717.2 543 67.4
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.9e-204 716.5 560 67.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.5e-204 716.1 712 54.5
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.3e-204 715.7 668 55.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 3.6e-203 712.2 667 55.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 4.7e-203 711.8 629 58.0
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 5.4e-199 698.4 661 57.5
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 5.1e-197 691.8 653 55.7
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 8.4e-192 674.5 537 64.4
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.1e-191 674.1 656 54.4
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 4.2e-191 672.2 604 60.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.0e-189 666.0 652 54.4
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.5e-188 663.7 656 54.0
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 8.1e-179 631.3 654 52.6
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.8e-178 630.2 581 58.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 4.2e-175 619.0 530 58.9
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 9.6e-172 607.8 537 56.4
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.8e-170 603.6 514 60.5
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.8e-170 603.6 564 57.3
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 4.9e-168 595.5 654 49.8
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 8.4e-168 594.7 657 52.4
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 2.5e-167 593.2 653 49.9
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.1e-166 590.1 654 49.7
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.9e-160 569.7 651 47.2
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.6e-150 535.8 402 66.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 3.4e-145 519.6 653 43.0
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.6e-140 503.4 427 60.7
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.3e-140 503.1 625 45.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.8e-139 499.2 645 42.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.9e-137 492.3 645 42.2
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.3e-136 491.1 649 43.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.3e-131 474.6 653 40.1
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 7.2e-127 458.8 389 59.6
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.5e-119 434.5 392 61.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.5e-89 333.6 383 48.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 4.0e-85 320.1 253 63.6
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 5.8e-84 316.2 429 43.4
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.4e-83 312.8 245 62.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.1e-73 281.2 231 59.3
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.2e-68 265.4 429 36.6
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.6e-68 262.7 214 65.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 8.7e-64 249.2 383 40.7
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 4.5e-60 236.9 382 39.5
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.5e-55 221.1 202 62.4
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 9.3e-50 202.6 252 46.8
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 2.5e-47 194.5 308 42.2
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-46 191.4 201 54.2
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.1e-46 191.4 306 39.9
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.6e-41 175.3 167 52.1
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-41 174.9 158 58.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 5.3e-37 160.2 256 38.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.2e-33 149.1 238 43.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 5.7e-31 140.2 187 46.0
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 7.4e-31 139.8 632 24.4
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 9.7e-31 139.4 107 63.6
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 6.9e-29 133.3 98 65.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 8.5e-27 126.3 96 64.6
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.7e-24 116.7 120 58.3
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-22 111.7 134 49.3
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-21 109.0 132 47.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.2e-20 105.9 115 53.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 5.9e-20 103.6 80 62.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.9e-20 103.6 132 46.2
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 6.5e-19 100.1 80 61.2
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.1e-17 93.6 67 67.2
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.4e-16 92.4 71 64.8
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-16 91.3 87 54.0
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 5.7e-15 87.0 71 60.6
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.4e-13 82.4 68 58.8
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 2.0e-12 78.6 68 54.4
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-11 74.7 84 42.9
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 5.0e-11 73.9 68 51.5
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 8.5e-11 73.2 67 58.2
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 3.0e-08 64.7 49 65.3
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 1.2e-07 62.8 96 43.8
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 4.4e-07 60.8 54 46.3
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.3e-06 59.3 132 29.5
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 3.7e-06 57.8 49 57.1
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 8.3e-06 56.6 48 56.2


User provided reference genes

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