Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 7.9e-215 750.4 434 100.0
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.2e-202 709.9 434 95.2
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.4e-190 669.8 434 91.5
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 6.2e-151 538.1 431 68.0
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.6e-141 506.1 258 90.7
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 2.6e-141 506.1 258 90.7
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 7.6e-141 504.6 258 89.9
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 1.1e-139 500.7 258 88.8
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.9e-139 500.0 258 88.0
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.2e-138 497.3 258 88.0
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 6.0e-138 495.0 259 87.3
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.3e-137 493.8 259 86.5
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 3.0e-137 492.7 261 87.0
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.1e-136 490.7 260 85.8
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 7.3e-136 488.0 258 84.1
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 7.3e-136 488.0 261 86.2
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.6e-136 487.6 260 85.4
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 9.6e-136 487.6 336 72.3
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.1e-135 486.5 475 60.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.6e-135 485.7 261 85.4
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 3.6e-135 485.7 261 85.8
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.8e-135 485.3 258 87.6
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 8.1e-135 484.6 256 85.2
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 8.1e-135 484.6 258 86.0
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 8.1e-135 484.6 262 85.5
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 8.1e-135 484.6 263 83.7
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 5.3e-134 481.9 259 85.7
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 5.3e-134 481.9 258 86.0
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 9.0e-134 481.1 258 84.1
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.5e-133 480.3 258 85.7
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.8e-133 478.4 258 82.6
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.6e-133 478.0 261 85.1
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 9.9e-133 477.6 258 82.9
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 9.9e-133 477.6 260 82.7
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.3e-132 477.2 256 85.2
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.7e-132 476.9 261 84.7
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 3.8e-132 475.7 259 84.9
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 4.9e-132 475.3 260 81.9
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.1e-131 474.2 253 84.6
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.4e-131 473.8 258 83.7
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.4e-131 473.0 442 60.9
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 2.4e-131 473.0 260 82.7
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 2.4e-131 473.0 258 82.6
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.4e-131 473.0 261 83.1
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 3.2e-131 472.6 263 81.4
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 5.4e-131 471.9 260 82.3
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.2e-130 470.7 444 62.8
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.1e-130 469.9 453 55.2
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.1e-130 469.9 255 82.4
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.7e-130 469.5 461 61.6
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.7e-130 469.5 255 82.7
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 3.5e-130 469.2 260 82.7
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 3.5e-130 469.2 254 81.9
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 7.9e-130 468.0 336 71.1
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.0e-129 467.6 256 80.9
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.0e-129 467.6 255 82.4
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.0e-129 467.6 259 83.0
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.3e-129 467.2 253 82.6
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.8e-129 466.8 260 81.2
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.8e-129 466.8 431 65.4
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.8e-129 466.8 263 81.0
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 3.0e-129 466.1 283 77.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 5.1e-129 465.3 260 82.3
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.5e-128 463.0 260 81.2
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 4.3e-128 462.2 260 81.2
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 4.3e-128 462.2 260 81.2
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 4.3e-128 462.2 255 81.6
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 9.6e-128 461.1 254 83.9
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.6e-127 460.3 260 81.2
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 2.1e-127 459.9 237 89.0
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 4.8e-127 458.8 257 80.5
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 6.2e-127 458.4 258 81.8
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.8e-126 456.8 263 79.8
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.1e-126 456.1 450 54.0
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 6.9e-126 454.9 265 81.5
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 9.0e-126 454.5 265 77.0
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.5e-125 453.8 253 81.8
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 5.8e-125 451.8 256 82.0
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 7.6e-125 451.4 258 80.6
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 7.6e-125 451.4 260 79.6
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.3e-124 450.7 264 76.9
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 2.2e-124 449.9 257 79.4
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.2e-124 449.9 450 54.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 3.8e-124 449.1 256 79.7
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 3.8e-124 449.1 260 79.2
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 3.8e-124 449.1 260 79.2
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 6.4e-124 448.4 252 81.0
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 2.5e-123 446.4 262 79.0
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 4.2e-123 445.7 258 79.5
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 5.5e-123 445.3 259 79.2
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 9.3e-123 444.5 255 81.2
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 9.3e-123 444.5 256 80.1
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.2e-122 444.1 259 78.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 6.0e-122 441.8 465 59.6
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.3e-121 440.7 261 78.2
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 3.0e-121 439.5 266 74.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 3.0e-121 439.5 254 79.9
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 6.7e-121 438.3 237 84.4
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.5e-120 436.4 260 79.2
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.6e-119 433.7 256 76.2
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 3.7e-119 432.6 260 78.8
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.8e-119 432.2 253 77.9
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 4.8e-119 432.2 258 78.3
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.4e-118 429.9 257 77.0
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 5.0e-116 422.2 313 65.8
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.6e-114 417.2 260 75.4
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 7.4e-112 408.3 261 73.6
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.6e-111 407.1 262 73.3
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 2.2e-111 406.8 301 63.5
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 3.4e-109 399.4 256 73.4
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.5e-107 392.1 261 72.0
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 6.1e-106 388.7 227 79.7
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.8e-105 387.1 213 84.5
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.7e-103 380.6 270 67.4
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 4.8e-103 379.0 202 82.7
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.5e-99 366.7 211 76.3
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 3.3e-96 356.3 182 89.0
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.2e-93 347.8 263 62.4
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.0e-93 347.1 266 62.0
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 5.2e-89 332.4 263 57.8
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.7e-87 327.4 176 87.5
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.0e-84 318.2 254 61.8
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.7e-84 317.4 174 86.2
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.9e-83 313.9 173 84.4
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.9e-83 313.9 173 84.4
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.5e-83 313.5 171 84.2
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 7.2e-83 312.0 246 62.6
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.0e-81 308.1 245 62.9
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.0e-81 306.6 173 83.8
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 4.0e-81 306.2 173 82.7
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.7e-80 302.4 170 84.1
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 5.5e-75 285.8 242 61.2
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 6.1e-74 282.3 244 59.4
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.2e-69 268.1 172 72.7
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 5.0e-68 262.7 267 52.8
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 2.6e-64 250.4 244 51.6
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.7e-64 249.2 192 61.5
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.2e-61 241.5 230 57.0
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.6e-61 241.1 263 48.7
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.7e-61 240.4 191 62.3
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.9e-54 217.6 181 61.9
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.7e-53 213.8 129 79.1
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.3e-52 211.5 175 56.6
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 5.6e-51 206.1 223 47.5
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.8e-48 196.1 115 80.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.3e-47 194.9 111 82.0
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.9e-47 193.7 249 43.8
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.1e-45 187.6 170 56.5
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.5e-40 171.4 128 62.5
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 2.6e-40 170.6 124 62.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 9.6e-35 152.1 84 77.4
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-30 137.9 81 74.1
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 5.3e-17 93.2 48 79.2
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 5.3e-17 93.2 48 79.2
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 2.9e-15 87.4 54 72.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.6e-08 62.8 165 28.5
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.3e-07 62.0 146 29.5
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 9.3e-06 55.8 198 29.3


User provided reference genes

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