Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 0.0e+00 1933.3 967 100.0
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 0.0e+00 1825.4 958 95.0
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 0.0e+00 1644.0 952 87.5
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1087.4 974 59.1
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1082.0 974 58.6
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 0.0e+00 1075.1 979 58.5
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 6.3e-305 1050.8 972 57.7
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 4.9e-297 1024.6 969 54.4
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.9e-293 1012.7 962 56.2
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 1.2e-292 1010.0 980 54.7
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 2.3e-291 1005.7 971 55.1
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.5e-290 1003.0 746 70.9
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 2.6e-290 1002.3 979 55.1
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 5.8e-290 1001.1 974 54.4
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 9.5e-285 983.8 976 54.0
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 3.1e-283 978.8 973 53.6
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 4.4e-282 974.9 970 53.8
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 2.2e-281 972.6 972 52.9
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 3.7e-281 971.8 973 53.4
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 5.0e-278 961.4 973 52.6
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 3.7e-273 945.3 973 52.1
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.1e-267 927.2 984 51.1
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 9.0e-259 897.5 974 49.1
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 2.4e-251 872.8 966 47.3
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 4.6e-247 858.6 978 48.1
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.1e-243 845.9 978 46.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 4.9e-241 838.6 980 46.6
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 1.9e-237 826.6 1060 44.7
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 1.6e-236 823.5 1060 44.3
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 6.9e-235 818.1 969 45.4
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 9.0e-235 817.8 985 45.6
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 5.0e-225 785.4 1191 40.3
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 6.1e-223 778.5 973 47.0
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 2.8e-220 769.6 978 44.7
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 4.1e-219 765.8 974 44.0
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 9.4e-216 754.6 993 43.7
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 5.0e-209 732.3 782 49.6
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 1.3e-188 664.5 1282 34.8
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.0e-185 654.8 534 63.9
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 6.1e-183 645.6 610 55.7
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 7.0e-179 632.1 478 66.1
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 8.6e-177 625.2 488 63.7
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 8.6e-177 625.2 462 67.3
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 2.1e-175 620.5 480 63.3
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.8e-174 617.5 462 65.4
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 7.5e-173 612.1 464 65.1
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 5.4e-171 605.9 497 60.8
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.6e-170 602.8 470 62.3
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 4.6e-170 602.8 548 58.8
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 3.0e-169 600.1 451 65.0
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 8.6e-169 598.6 453 63.4
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.9e-168 597.4 454 64.5
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 4.7e-167 592.8 466 62.4
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 5.8e-165 585.9 462 62.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 1.4e-163 581.3 454 61.0
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 7.8e-162 575.5 469 61.0
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.8e-162 575.5 454 61.2
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.0e-161 575.1 469 60.6
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.7e-161 574.3 454 61.2
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 6.6e-161 572.4 462 61.7
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.5e-160 571.2 461 60.5
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 7.3e-160 568.9 462 62.3
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 2.8e-159 567.0 470 60.0
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 6.2e-159 565.8 452 59.5
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.8e-158 564.3 452 59.7
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 4.0e-158 563.1 502 55.2
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.5e-157 561.2 502 54.6
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 4.4e-157 559.7 386 69.7
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 2.9e-156 557.0 1046 33.6
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 5.4e-155 552.7 454 60.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 5.4e-155 552.7 1095 33.8
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 3.9e-153 546.6 451 60.5
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.2e-151 541.6 457 59.7
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 4.7e-151 539.7 493 56.4
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 8.9e-150 535.4 462 57.8
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 7.6e-149 532.3 456 57.5
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 3.8e-148 530.0 480 57.5
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 8.4e-148 528.9 498 54.8
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.1e-147 528.5 490 55.7
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.4e-147 528.1 1025 34.0
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.2e-146 525.0 451 58.5
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.7e-146 523.9 451 58.3
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 4.6e-146 523.1 465 56.6
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 8.7e-145 518.8 469 56.9
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 3.3e-144 516.9 451 58.3
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 4.8e-143 513.1 451 57.9
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.1e-142 511.9 461 56.4
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.1e-142 511.9 1074 32.1
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 5.8e-141 506.1 469 56.5
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 4.2e-139 500.0 461 56.0
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 9.6e-136 488.8 452 54.2
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 9.6e-136 488.8 737 42.1
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.8e-134 484.6 352 67.0
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 4.0e-134 483.4 460 54.8
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 4.6e-130 469.9 341 65.1
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 2.3e-129 467.6 350 64.6
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 1.6e-127 461.5 467 53.1
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 1.6e-127 461.5 467 53.1
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 1.3e-124 451.8 361 62.6
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 5.1e-121 439.9 344 61.3
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 1.6e-119 434.9 721 39.3
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 1.1e-115 422.2 462 47.8
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 5.5e-115 419.9 469 48.6
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 6.9e-110 402.9 373 55.8
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 7.7e-109 399.4 466 43.1
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 8.5e-108 396.0 633 39.2
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 2.4e-102 377.9 363 53.7
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 5.1e-97 360.1 437 41.9
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 3.3e-96 357.5 450 44.7
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 3.3e-96 357.5 980 28.4
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 3.2e-91 340.9 366 49.5
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.0e-77 295.0 258 58.1
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.7e-76 292.0 322 47.5
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 2.9e-68 264.6 466 38.2
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 6.6e-68 263.5 291 46.7
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 8.3e-63 246.5 170 65.9
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.2e-62 244.6 196 65.3
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.0e-61 241.9 206 59.2
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 7.5e-56 223.4 176 64.2
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 7.1e-46 190.3 188 52.1
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 2.1e-42 178.7 117 68.4
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.4e-30 139.4 234 37.6
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 2.3e-28 132.1 322 32.3
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 1.3e-26 126.3 145 46.9
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 6.0e-21 107.5 62 72.6
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 6.0e-21 107.5 620 23.7
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.6e-13 82.8 79 53.2
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 2.0e-08 65.9 42 61.9
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 3.2e-06 58.5 132 31.8


User provided reference genes

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