Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 2.1e-82 308.9 148 100.0
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.7e-80 300.8 148 96.6
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 7.9e-74 280.4 145 89.0
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 2.8e-71 271.9 148 86.5
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 4.5e-69 264.6 143 86.0
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 4.7e-66 254.6 142 83.1
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.0e-65 253.4 146 81.5
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.6e-64 248.8 149 79.2
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.3e-63 244.2 142 78.9
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.4e-62 242.3 143 79.0
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.1e-62 241.9 136 78.7
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.1e-62 241.5 141 77.3
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.3e-62 241.1 145 77.2
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 9.1e-62 240.4 151 76.2
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.0e-61 239.2 147 75.5
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.6e-61 238.8 147 73.5
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 3.5e-61 238.4 147 75.5
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.5e-61 238.0 144 75.0
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 5.9e-61 237.7 146 76.0
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 7.7e-61 237.3 136 77.2
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 7.7e-61 237.3 142 76.8
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 7.7e-61 237.3 144 75.0
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 7.7e-61 237.3 144 75.0
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.0e-60 236.9 147 74.1
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.7e-60 236.1 143 74.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 3.8e-60 235.0 139 79.1
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.5e-59 232.3 141 74.5
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.5e-59 232.3 141 73.8
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 2.5e-59 232.3 145 73.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.2e-59 231.9 147 72.8
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 7.2e-59 230.7 140 75.0
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.7e-58 228.8 148 72.3
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.6e-58 228.4 138 78.3
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 6.1e-58 227.6 139 74.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 6.1e-58 227.6 152 70.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.0e-57 226.9 148 69.6
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.4e-57 226.5 155 71.0
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.8e-57 226.1 145 71.0
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.3e-57 225.7 142 73.9
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.0e-57 225.3 148 70.9
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.0e-57 225.3 213 57.7
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 3.0e-57 225.3 140 72.9
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 5.2e-57 224.6 142 73.9
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 5.2e-57 224.6 142 73.9
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.2e-57 224.6 141 73.8
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 8.8e-57 223.8 143 72.7
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.2e-56 223.4 143 72.0
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.5e-56 223.0 135 74.8
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 2.0e-56 222.6 144 70.8
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 2.0e-56 222.6 144 70.8
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 7.5e-56 220.7 144 72.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 7.5e-56 220.7 145 69.7
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 9.7e-56 220.3 143 71.3
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 2.2e-55 219.2 139 71.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.2e-55 219.2 145 67.6
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 6.3e-55 217.6 139 71.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 6.3e-55 217.6 134 72.4
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 8.2e-55 217.2 147 69.4
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.4e-54 216.5 145 69.7
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.4e-54 215.7 144 68.1
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 9.1e-54 213.8 141 69.5
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.2e-53 213.4 142 70.4
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.6e-53 213.0 146 71.2
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 4.5e-53 211.5 133 70.7
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 5.9e-53 211.1 144 66.7
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.7e-53 210.7 133 73.7
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 7.7e-53 210.7 142 71.1
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.0e-52 210.3 134 73.1
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.0e-52 210.3 142 66.9
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.3e-52 209.9 134 73.1
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.7e-52 209.5 135 71.9
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.7e-52 209.5 147 63.3
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 2.2e-52 209.1 144 70.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.9e-52 208.8 134 71.6
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.9e-52 208.8 145 69.0
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 5.0e-52 208.0 156 62.8
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 6.5e-52 207.6 131 71.8
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.5e-51 205.7 138 70.3
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.5e-51 205.7 138 70.3
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.5e-51 205.7 138 70.3
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.5e-51 205.7 134 69.4
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.5e-51 205.7 129 73.6
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 5.5e-51 204.5 130 71.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 5.5e-51 204.5 130 71.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 5.5e-51 204.5 130 71.5
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 5.5e-51 204.5 142 66.2
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 5.5e-51 204.5 142 66.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.5e-51 204.5 133 72.2
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-50 203.4 131 71.0
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-50 203.4 134 68.7
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-50 203.0 133 71.4
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-50 203.0 133 71.4
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 3.6e-50 201.8 133 69.9
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.0e-49 200.3 138 68.8
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.8e-49 199.5 152 64.5
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.8e-49 199.5 142 64.8
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.8e-49 199.5 132 69.7
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 4.0e-49 198.4 127 73.2
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 5.2e-49 198.0 144 66.0
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 6.8e-49 197.6 148 61.5
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 8.8e-49 197.2 131 71.0
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 3.4e-48 195.3 137 65.0
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.7e-48 194.5 142 64.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 9.8e-48 193.7 138 64.5
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 2.8e-47 192.2 121 73.6
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-45 186.8 121 71.1
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.3e-44 182.6 121 68.6
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.8e-44 181.8 142 54.2
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.5e-43 179.9 142 54.2
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.5e-43 179.9 127 64.6
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.4e-41 173.3 112 71.4
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 3.4e-40 168.7 148 53.4
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.7e-39 166.4 124 62.9
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.2e-37 160.2 87 86.2
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 5.9e-37 157.9 132 59.1
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.6e-34 149.8 217 38.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 5.2e-33 144.8 98 74.5
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 6.8e-33 144.4 135 53.3
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.6e-32 142.5 147 53.1
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.7e-31 139.8 86 76.7
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.7e-31 139.8 136 47.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 2.9e-31 139.0 81 79.0
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 3.7e-31 138.7 134 47.0
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.9e-30 136.3 130 51.5
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 2.0e-29 132.9 135 45.2
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 8.6e-28 127.5 121 50.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-27 125.9 121 49.6
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 4.3e-27 125.2 121 49.6
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 7.3e-27 124.4 84 69.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.5e-24 116.7 145 38.6
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-24 115.2 95 54.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.7e-23 113.2 136 40.4
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.9e-23 112.5 136 40.4
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 3.7e-23 112.1 162 38.9
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-22 109.4 95 52.6
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.4e-22 108.2 134 41.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 3.9e-20 102.1 89 58.4
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 3.1e-17 92.4 61 68.9
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 3.4e-16 89.0 144 29.2
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.3e-15 87.0 135 29.6
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.2e-14 80.9 55 67.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.2e-13 80.5 54 68.5
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 6.6e-12 74.7 62 53.2
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 7.3e-11 71.2 107 34.6
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 5.4e-06 55.1 36 66.7
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 7.1e-06 54.7 59 44.1


User provided reference genes

Program Settings