Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 3.1e-207 724.9 378 100.0
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 2.0e-198 695.7 378 95.8
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 2.3e-170 602.4 419 79.5
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 1.7e-133 479.9 377 72.1
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 3.1e-98 362.8 367 56.7
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 3.4e-97 359.4 376 55.6
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.3e-96 357.5 368 55.7
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 3.8e-96 355.9 366 57.7
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 4.6e-94 349.0 373 55.2
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 1.8e-93 347.1 378 54.0
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 1.8e-93 347.1 365 54.0
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 2.3e-93 346.7 372 54.3
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 6.7e-93 345.1 362 55.2
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 9.7e-92 341.3 364 56.3
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 9.7e-92 341.3 372 51.3
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 1.3e-91 340.9 365 55.1
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 2.2e-91 340.1 376 54.5
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 4.8e-91 339.0 365 52.6
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 4.8e-91 339.0 377 53.1
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 3.1e-90 336.3 365 55.1
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 4.1e-90 335.9 382 53.9
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 9.1e-90 334.7 387 51.2
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 1.2e-89 334.3 387 51.7
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 2.0e-89 333.6 378 52.1
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 4.5e-89 332.4 365 54.0
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.3e-88 330.9 366 53.8
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 1.3e-88 330.9 368 51.6
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 1.1e-87 327.8 376 53.7
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 1.1e-87 327.8 366 53.6
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 1.9e-87 327.0 386 52.8
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 7.2e-87 325.1 368 52.4
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 1.6e-86 323.9 378 52.4
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 1.6e-86 323.9 363 52.9
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 3.6e-86 322.8 366 54.6
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 7.9e-86 321.6 377 52.5
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 1.0e-85 321.2 377 50.7
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 1.4e-85 320.9 366 52.7
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 5.1e-85 318.9 386 50.8
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 6.7e-85 318.5 373 51.5
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 1.1e-84 317.8 364 52.7
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 3.3e-84 316.2 372 50.8
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 9.7e-84 314.7 382 51.0
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 1.3e-83 314.3 390 47.7
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 1.3e-83 314.3 377 50.9
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 1.3e-83 314.3 388 48.5
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 2.4e-82 310.1 381 51.4
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 5.3e-82 308.9 363 50.1
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 5.3e-82 308.9 383 49.9
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 1.2e-81 307.8 382 51.0
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 1.2e-81 307.8 381 49.1
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 1.3e-80 304.3 453 44.6
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 1.3e-80 304.3 370 47.6
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 2.9e-80 303.1 382 49.7
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 3.8e-80 302.8 381 50.1
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 5.0e-80 302.4 383 49.3
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 5.0e-80 302.4 370 50.5
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 6.5e-80 302.0 370 50.5
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 9.4e-79 298.1 381 48.6
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 1.6e-78 297.4 383 48.6
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 2.7e-78 296.6 398 47.7
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 2.7e-78 296.6 363 49.9
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 3.9e-77 292.7 372 50.0
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 9.7e-76 288.1 408 46.6
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 4.8e-75 285.8 377 48.8
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 5.3e-74 282.3 403 45.9
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 5.3e-74 282.3 232 64.2
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 9.1e-74 281.6 278 57.2
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.6e-73 280.8 250 60.4
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 3.5e-73 279.6 377 48.5
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 5.9e-73 278.9 374 48.7
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 1.5e-71 274.2 372 46.2
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.0e-69 268.1 250 59.2
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 7.0e-66 255.4 367 45.8
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 7.2e-63 245.4 374 43.3
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 3.6e-62 243.0 375 44.3
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 6.1e-62 242.3 324 46.0
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 1.8e-61 240.7 251 55.8
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 3.0e-61 240.0 385 43.9
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.7e-59 234.2 232 57.3
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 1.7e-59 234.2 413 38.7
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 3.7e-59 233.0 279 47.0
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 1.4e-58 231.1 374 40.6
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 2.0e-57 227.3 248 53.6
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 5.9e-57 225.7 351 42.5
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 7.7e-57 225.3 256 51.2
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 1.7e-56 224.2 467 38.8
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 2.9e-56 223.4 245 54.3
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 6.5e-56 222.2 387 38.8
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 4.2e-55 219.5 234 52.1
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 6.1e-54 215.7 150 72.0
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 2.6e-52 210.3 284 45.4
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 5.7e-52 209.1 341 41.3
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 4.9e-51 206.1 277 44.8
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 1.4e-50 204.5 317 41.6
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 2.0e-49 200.7 388 38.4
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 5.9e-49 199.1 247 51.0
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 1.7e-48 197.6 280 47.1
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 2.3e-48 197.2 248 49.2
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 1.2e-46 191.4 250 47.6
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 8.9e-45 185.3 276 46.4
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 2.9e-43 180.3 227 44.9
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 6.4e-43 179.1 380 34.7
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 4.6e-41 172.9 378 34.9
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 2.3e-40 170.6 251 42.6
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 1.1e-39 168.3 239 43.9
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 8.9e-37 158.7 326 35.3
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 4.1e-34 149.8 222 46.4
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 1.7e-32 144.4 281 37.7
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 1.2e-28 131.7 142 53.5
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 1.5e-28 131.3 153 52.9
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 1.5e-28 131.3 153 52.9
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 1.4e-26 124.8 204 42.6
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 2.8e-22 110.5 94 64.9
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 8.1e-22 109.0 226 39.4
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 6.8e-21 105.9 112 50.9
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 8.9e-21 105.5 104 55.8
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 8.9e-21 105.5 247 35.2
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 3.2e-18 97.1 66 72.7
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 2.7e-17 94.0 294 30.6
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 4.6e-17 93.2 64 73.4
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 9.9e-12 75.5 67 59.7
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 1.6e-09 68.2 119 42.0
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 2.1e-09 67.8 72 56.9
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 7.3e-07 59.3 49 59.2
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 7.3e-07 59.3 49 59.2


User provided reference genes

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