Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 3.6e-258 894.4 454 100.0
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 5.7e-240 833.9 454 94.3
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 5.0e-228 794.3 460 89.6
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 5.4e-198 694.5 459 79.1
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 5.3e-137 491.9 441 60.3
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 1.2e-136 490.7 401 61.3
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 5.9e-136 488.4 393 64.1
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 1.0e-135 487.6 429 58.7
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.3e-135 487.3 403 64.5
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 1.3e-135 487.3 459 57.5
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 6.5e-135 485.0 403 62.8
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.9e-134 483.4 450 58.2
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 1.9e-134 483.4 442 59.7
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 3.2e-134 482.6 446 57.8
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 4.2e-134 482.3 369 67.8
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 1.0e-132 477.6 460 57.2
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 1.1e-131 474.2 354 66.1
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 7.4e-131 471.5 398 61.3
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 2.8e-130 469.5 345 66.4
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 2.8e-130 469.5 366 64.8
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 4.8e-130 468.8 422 58.3
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 8.2e-130 468.0 357 64.7
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.4e-129 467.2 345 66.1
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.4e-129 466.5 345 65.8
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 3.1e-129 466.1 384 63.0
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 1.2e-128 464.2 420 57.4
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 1.0e-127 461.1 325 70.2
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.0e-127 461.1 452 56.2
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 8.5e-127 458.0 444 57.0
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 1.1e-126 457.6 306 73.2
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 1.5e-126 457.2 508 52.2
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 4.2e-126 455.7 454 56.6
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.2e-126 455.7 444 56.8
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 7.2e-126 454.9 377 61.0
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 7.2e-126 454.9 370 61.1
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 1.2e-125 454.1 382 60.5
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 1.2e-125 454.1 371 62.0
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 2.7e-125 453.0 422 58.5
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 3.6e-125 452.6 363 62.3
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 4.7e-125 452.2 406 59.6
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 2.3e-124 449.9 503 50.1
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 6.7e-124 448.4 408 56.9
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 2.0e-123 446.8 364 61.8
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 4.4e-123 445.7 357 62.7
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 7.5e-123 444.9 382 61.3
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 7.5e-123 444.9 448 54.2
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 4.8e-122 442.2 353 64.0
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 4.8e-122 442.2 353 64.0
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 8.2e-122 441.4 343 66.2
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 8.2e-122 441.4 359 61.6
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.1e-121 441.0 471 51.8
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.4e-121 440.7 376 60.1
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 2.4e-121 439.9 448 52.7
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 9.1e-121 438.0 350 61.7
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 2.7e-120 436.4 369 61.2
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 3.5e-120 436.0 325 66.5
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 4.5e-120 435.6 359 61.8
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 4.5e-120 435.6 447 54.8
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 5.9e-120 435.3 345 64.3
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.0e-119 434.5 365 60.0
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 8.5e-119 431.4 342 64.6
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.9e-118 430.3 349 63.0
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 1.9e-118 430.3 417 54.0
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.5e-118 429.9 414 56.5
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 1.2e-117 427.6 449 51.7
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.7e-117 426.4 400 56.2
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 6.8e-116 421.8 350 61.4
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 8.8e-116 421.4 313 66.5
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 2.0e-115 420.2 432 53.2
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 4.4e-115 419.1 399 56.4
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.8e-115 417.9 393 56.7
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 3.7e-114 416.0 338 63.6
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.4e-113 414.1 300 66.0
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.0e-112 410.2 342 61.7
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 5.9e-112 408.7 315 63.5
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 7.7e-112 408.3 413 54.2
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.7e-111 407.1 360 56.4
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.9e-111 406.4 351 60.1
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 1.1e-110 404.4 358 56.7
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 1.5e-110 404.1 317 64.4
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.5e-110 403.3 374 57.0
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 3.3e-110 402.9 322 61.2
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 5.5e-110 402.1 351 59.5
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 4.7e-109 399.1 354 57.6
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.2e-106 390.2 329 59.9
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 5.4e-105 385.6 358 56.7
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 2.5e-102 376.7 294 61.2
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 1.4e-100 370.9 502 44.8
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 8.9e-100 368.2 384 51.3
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 8.9e-100 368.2 343 59.8
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.4e-99 366.3 304 64.1
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 3.4e-99 366.3 297 60.6
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.3e-98 364.4 333 57.4
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.5e-94 350.9 257 65.8
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 5.8e-91 339.0 248 66.5
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.8e-88 328.6 374 49.7
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 1.1e-78 298.1 376 48.7
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.8e-77 293.5 340 50.0
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 6.2e-77 292.4 309 54.7
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 7.1e-73 278.9 238 57.6
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.6e-67 260.4 278 51.1
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 8.4e-66 255.4 297 43.4
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 1.4e-65 254.6 210 60.0
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.2e-65 253.4 322 45.3
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.1e-60 238.4 286 49.0
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 4.0e-60 236.5 242 54.5
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 2.6e-59 233.8 218 54.6
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.5e-59 233.0 222 56.8
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 2.8e-53 213.8 187 55.6
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 2.6e-51 207.2 175 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.3e-50 204.9 241 46.5
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 4.6e-48 196.4 296 39.5
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 2.4e-44 184.1 202 50.0
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 1.0e-34 152.1 200 47.5
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 6.5e-34 149.4 150 53.3
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.2e-33 147.1 186 44.6
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 2.1e-32 144.4 168 47.6
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 1.5e-30 138.3 112 57.1
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 6.5e-26 122.9 166 44.6
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.4e-25 121.7 233 39.1
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 2.7e-24 117.5 82 63.4
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 7.9e-24 115.9 188 42.0
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 3.9e-23 113.6 187 40.6
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 3.3e-22 110.5 193 36.8
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 4.4e-22 110.2 311 29.6
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 2.2e-21 107.8 327 28.1
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 2.8e-21 107.5 98 56.1
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 1.4e-20 105.1 95 58.9
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.4e-20 104.4 216 36.1
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 2.4e-20 104.4 104 54.8
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 7.0e-20 102.8 63 76.2
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 7.0e-20 102.8 78 65.4
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 1.2e-19 102.1 133 46.6
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 1.0e-18 99.0 107 50.5
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 1.3e-18 98.6 171 33.9
Mapoly0003s0267 Marchantia polymorpha HOM05D032652 ORTHO05D005510 4.4e-14 83.6 328 26.2
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 1.3e-13 82.0 100 48.0
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 1.7e-13 81.6 65 60.0
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 1.7e-13 81.6 273 26.0
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 1.7e-13 81.6 315 25.7
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 5.9e-11 73.2 58 55.2
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.3e-10 72.0 262 28.2
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 6.5e-10 69.7 281 24.2
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.9e-09 68.2 254 26.0
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 7.2e-09 66.2 317 24.9
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 3.0e-07 60.8 62 45.2
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 1.5e-06 58.5 220 24.1


User provided reference genes

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