Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.6e-45 184.5 91 100.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 3.8e-34 147.9 73 98.6
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 5.5e-33 144.1 73 94.5
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.2e-27 126.3 73 80.8
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.4e-25 119.4 74 77.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 4.2e-25 117.9 74 78.4
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.2e-25 117.9 74 77.0
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.1e-25 117.1 74 75.7
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 9.3e-25 116.7 72 77.8
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 7.9e-24 113.6 92 65.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 7.9e-24 113.6 74 74.3
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.0e-23 113.2 74 75.7
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.0e-23 113.2 74 75.7
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.9e-23 111.3 74 73.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 3.9e-23 111.3 74 74.3
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 3.9e-23 111.3 74 74.3
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 6.7e-23 110.5 74 71.6
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 8.7e-23 110.2 74 73.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.1e-22 109.8 74 74.3
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.1e-22 109.8 74 74.3
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.5e-22 109.4 73 74.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.3e-22 108.2 72 73.6
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.3e-22 108.2 72 73.6
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.3e-21 106.3 74 66.2
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 2.2e-21 105.5 73 72.6
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.2e-21 105.5 74 77.0
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 4.8e-21 104.4 74 70.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 4.8e-21 104.4 73 75.3
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 6.3e-21 104.0 75 72.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 6.3e-21 104.0 74 71.6
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.4e-20 102.8 74 71.6
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.4e-20 102.8 74 71.6
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.4e-20 102.8 74 70.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.4e-20 102.8 74 68.9
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.4e-20 102.1 74 73.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.4e-20 102.1 92 63.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.1e-20 101.7 74 71.6
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.1e-20 101.7 74 75.7
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.1e-20 101.3 74 67.6
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.3e-20 100.9 74 70.3
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.3e-20 100.9 74 70.3
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 6.9e-20 100.5 78 69.2
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 6.9e-20 100.5 74 67.6
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 9.0e-20 100.1 74 68.9
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.5e-19 99.4 74 68.9
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.5e-19 99.4 77 66.2
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.6e-19 98.6 74 67.6
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.6e-19 98.6 74 66.2
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.4e-19 98.2 73 68.5
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.4e-19 98.2 73 68.5
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.4e-19 98.2 73 68.5
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.4e-19 98.2 77 66.2
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 4.5e-19 97.8 73 67.1
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.5e-19 97.8 73 67.1
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 7.6e-19 97.1 74 68.9
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.3e-18 96.3 74 73.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.3e-18 96.3 74 71.6
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.3e-18 96.3 77 64.9
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.3e-18 96.3 74 66.2
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.2e-18 95.5 74 64.9
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 2.9e-18 95.1 74 63.5
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.9e-18 95.1 78 64.1
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 3.8e-18 94.7 74 64.9
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.0e-18 94.4 72 70.8
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 5.0e-18 94.4 76 63.2
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 5.0e-18 94.4 75 65.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 5.0e-18 94.4 74 67.6
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 6.5e-18 94.0 74 68.9
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 8.5e-18 93.6 74 63.5
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.4e-17 92.8 77 64.9
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.4e-17 92.8 73 61.6
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.4e-17 92.8 76 61.8
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.9e-17 92.4 74 64.9
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.5e-17 92.0 72 69.4
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.2e-17 91.7 74 64.9
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 4.2e-17 91.3 74 64.9
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 4.2e-17 91.3 74 64.9
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 5.5e-17 90.9 77 64.9
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 5.5e-17 90.9 74 63.5
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 7.2e-17 90.5 76 65.8
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 7.2e-17 90.5 73 61.6
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 9.3e-17 90.1 77 61.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.2e-16 89.7 75 65.3
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.2e-16 89.7 73 63.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.6e-16 89.4 78 65.4
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.7e-16 88.6 77 62.3
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.7e-16 88.6 74 62.2
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.7e-16 88.6 71 62.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 4.6e-16 87.8 75 61.3
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 4.6e-16 87.8 75 62.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 6.1e-16 87.4 74 62.2
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 6.1e-16 87.4 74 62.2
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 6.1e-16 87.4 74 64.9
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 7.9e-16 87.0 75 62.7
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.0e-15 86.7 75 60.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.0e-15 86.7 77 63.6
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.0e-15 86.7 77 63.6
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.4e-15 86.3 74 60.8
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.4e-15 86.3 71 62.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.4e-15 86.3 76 61.8
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.4e-15 86.3 76 63.2
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.4e-15 86.3 73 60.3
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.0e-15 85.1 75 61.3
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.9e-15 84.7 75 61.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 5.1e-15 84.3 82 54.9
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 6.7e-15 84.0 65 64.6
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.7e-15 84.0 67 58.2
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 8.8e-15 83.6 74 59.5
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.1e-14 83.2 77 61.0
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.1e-14 83.2 75 60.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.5e-14 82.8 74 60.8
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.5e-14 82.8 76 59.2
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.9e-14 82.4 64 64.1
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.9e-14 82.4 64 64.1
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 7.4e-14 80.5 78 57.7
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 7.4e-14 80.5 77 55.8
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 9.7e-14 80.1 74 56.8
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.7e-13 79.3 75 57.3
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.7e-13 79.3 81 55.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 3.7e-13 78.2 102 48.0
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 3.7e-13 78.2 82 52.4
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 3.7e-13 78.2 74 55.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.8e-13 77.8 76 57.9
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 4.8e-13 77.8 76 57.9
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 6.3e-13 77.4 78 57.7
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.3e-13 77.4 75 56.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.3e-13 77.4 86 48.8
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.2e-13 77.0 48 75.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.4e-12 76.3 76 59.2
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.4e-12 75.5 81 55.6
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.1e-12 74.7 77 50.6
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.2e-11 73.2 38 78.9
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.5e-11 72.8 70 62.9
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 2.6e-11 72.0 75 57.3
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 3.4e-11 71.6 77 51.9
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.5e-11 71.2 35 82.9
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 7.7e-11 70.5 74 55.4
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.0e-10 70.1 77 50.6
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 1.0e-10 70.1 47 66.0
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 2.5e-09 65.5 57 56.1
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 4.7e-08 61.2 36 69.4
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 4.4e-06 54.7 59 50.8


User provided reference genes

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