Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 0.0e+00 1455.7 742 100.0
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 0.0e+00 1385.2 743 95.6
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 0.0e+00 1318.1 742 91.4
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 0.0e+00 1184.5 747 83.5
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 5.3e-227 791.6 812 55.7
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.9e-224 783.1 763 58.1
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 5.7e-221 771.5 776 57.6
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.9e-216 756.5 754 57.7
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.8e-214 750.0 767 55.8
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 8.8e-214 747.7 731 58.0
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.1e-211 740.7 762 56.3
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.4e-211 739.6 771 56.4
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 3.1e-211 739.2 769 56.2
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 7.7e-210 734.6 774 55.4
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.5e-208 728.4 763 55.7
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 4.0e-206 722.2 787 54.5
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 4.0e-206 722.2 762 54.7
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 8.8e-206 721.1 766 55.6
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.3e-205 719.2 806 53.8
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 6.3e-204 714.9 781 55.1
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 8.2e-204 714.5 817 52.8
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.6e-202 710.3 774 53.4
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.0e-202 709.9 774 53.4
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.3e-201 707.2 766 53.8
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 2.2e-201 706.4 607 62.4
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.2e-201 706.4 780 54.1
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-199 700.7 778 54.5
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.1e-199 699.9 764 54.1
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 4.0e-198 695.7 764 52.6
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 9.8e-197 691.0 759 52.6
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.7e-196 690.3 764 55.1
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 8.3e-196 688.0 782 53.2
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 8.3e-196 688.0 722 55.8
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 2.4e-195 686.4 665 56.4
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.2e-194 684.1 761 52.8
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.0e-194 683.3 728 54.4
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 2.9e-193 679.5 605 59.5
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 3.6e-191 672.5 764 53.1
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 3.4e-189 666.0 773 51.6
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.3e-188 664.1 774 51.2
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.2e-188 663.3 756 53.0
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 6.3e-188 661.8 648 56.0
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.1e-187 661.0 580 60.9
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.8e-187 660.2 788 51.0
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 5.4e-187 658.7 607 59.8
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 5.9e-186 655.2 762 53.1
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 2.9e-185 652.9 764 50.3
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.5e-184 650.6 695 54.4
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 3.6e-183 646.0 781 50.6
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 4.7e-183 645.6 692 53.5
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 4.0e-182 642.5 747 51.8
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 8.9e-182 641.3 771 50.2
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 2.6e-181 639.8 744 52.0
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.6e-178 630.6 815 49.4
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.7e-178 629.8 767 50.7
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 6.0e-178 628.6 761 51.1
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 5.0e-177 625.5 777 50.3
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.5e-176 624.0 656 55.3
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 3.3e-176 622.9 774 48.4
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.6e-175 620.5 744 50.8
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 3.6e-175 619.4 783 49.9
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.4e-174 617.5 781 49.6
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 6.8e-174 615.1 770 51.2
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.5e-173 614.0 781 49.3
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 5.8e-173 612.1 737 49.8
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 8.3e-172 608.2 774 50.0
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 5.4e-171 605.5 785 49.8
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.6e-170 604.0 757 49.9
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.0e-169 601.3 785 48.4
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 3.9e-169 599.4 786 48.6
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 5.1e-169 599.0 776 48.3
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 8.6e-169 598.2 665 53.2
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 1.1e-168 597.8 782 48.0
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 6.2e-167 592.0 664 51.2
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 8.1e-167 591.7 721 49.1
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 1.4e-166 590.9 789 48.4
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 3.1e-166 589.7 785 46.9
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 2.6e-165 586.6 783 47.9
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 1.3e-164 584.3 786 47.7
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.9e-164 583.2 628 53.0
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.4e-163 580.9 787 46.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.4e-163 580.9 782 47.6
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 3.2e-163 579.7 775 46.8
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 7.8e-162 575.1 778 47.9
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 3.3e-160 569.7 782 47.3
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.2e-159 567.8 675 50.8
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 8.1e-159 565.1 756 46.7
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 3.1e-158 563.1 652 50.8
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 5.2e-158 562.4 472 61.7
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 5.8e-157 558.9 825 46.2
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 1.7e-148 530.8 779 46.2
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 5.8e-141 505.8 410 62.9
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.3e-136 489.6 508 54.3
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 7.1e-131 472.2 500 54.0
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 9.0e-126 455.3 609 45.6
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 8.4e-124 448.7 675 43.0
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.5e-117 426.4 516 49.6
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 1.4e-110 404.8 709 41.6
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 2.9e-108 397.1 701 37.8
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.1e-107 395.2 776 36.6
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.8e-103 380.6 584 43.2
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 3.1e-102 377.1 747 36.3
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.2e-90 338.6 410 47.6
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 7.5e-88 329.3 487 44.1
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 5.5e-75 286.6 803 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 7.3e-67 259.6 661 32.7
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 5.2e-65 253.4 274 53.3
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 2.6e-56 224.6 444 36.5
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 7.3e-51 206.5 317 41.6
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 6.2e-50 203.4 225 54.7
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 7.3e-43 179.9 242 44.2
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 7.8e-37 159.8 192 49.5
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 2.4e-33 148.3 247 46.6
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 4.4e-32 144.1 559 25.0
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 9.3e-30 136.3 151 53.0
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 7.3e-27 126.7 628 23.1
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 9.6e-27 126.3 207 47.8
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.8e-23 114.4 141 43.3
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 2.4e-22 111.7 151 48.3
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.3e-20 105.9 99 66.7
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 8.7e-20 103.2 94 55.3
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 3.8e-15 87.8 123 47.2
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.5e-13 81.3 112 46.4
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.1e-11 76.3 104 51.0
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 7.4e-11 73.6 175 30.9
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.4e-09 69.3 70 47.1
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.2e-08 66.2 77 50.6
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 67 34.3
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.5e-06 57.4 66 34.8


User provided reference genes

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