Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 8.9e-148 526.9 270 100.0
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 5.2e-132 474.6 270 91.9
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 2.6e-115 419.1 271 81.2
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 2.7e-96 355.9 271 71.6
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 2.7e-51 206.5 296 45.3
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 8.5e-50 201.4 294 41.5
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 2.5e-49 199.9 294 40.8
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 8.8e-47 191.4 275 42.2
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.2e-46 191.0 284 42.6
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 3.4e-46 189.5 307 41.0
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 4.4e-46 189.1 292 40.1
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.3e-45 187.6 286 40.6
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 4.9e-45 185.7 307 39.7
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 1.8e-44 183.7 332 37.7
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 3.1e-44 183.0 282 41.1
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 4.1e-44 182.6 273 42.9
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 9.1e-44 181.4 293 41.6
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.0e-43 180.3 288 41.7
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 2.0e-43 180.3 288 41.7
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 4.5e-43 179.1 289 41.9
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 5.9e-43 178.7 293 40.6
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 5.9e-43 178.7 310 40.0
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 1.7e-42 177.2 353 36.3
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 2.3e-42 176.8 277 41.2
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.0e-42 175.6 276 41.7
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.9e-41 173.7 271 39.9
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 3.3e-41 172.9 286 42.0
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 5.6e-41 172.2 289 37.4
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 7.2e-41 171.8 276 41.7
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 7.2e-41 171.8 224 45.5
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 2.1e-40 170.2 279 41.6
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 4.7e-40 169.1 376 33.8
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 6.1e-40 168.7 279 39.4
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 8.0e-40 168.3 314 36.6
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.2e-38 164.5 272 39.7
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.0e-38 163.7 292 35.3
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 2.6e-38 163.3 317 35.3
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.3e-37 161.0 306 34.6
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.7e-37 160.6 357 33.1
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.9e-37 159.8 314 36.3
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 4.9e-37 159.1 280 40.0
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.3e-37 158.3 269 41.3
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 8.3e-37 158.3 320 36.2
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.1e-36 157.9 314 36.0
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.8e-36 157.1 322 36.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.4e-36 156.8 322 36.0
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.6e-35 154.1 271 41.0
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 2.0e-35 153.7 319 34.8
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 4.6e-35 152.5 353 34.8
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 1.5e-33 147.5 276 35.1
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 2.5e-33 146.7 333 31.8
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 5.6e-33 145.6 335 33.4
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 7.3e-33 145.2 266 36.8
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.2e-32 144.4 321 33.0
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.6e-32 144.1 364 29.9
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 4.7e-32 142.5 297 32.7
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.0e-31 141.4 309 33.0
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.8e-31 140.6 296 33.4
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.8e-31 140.6 281 33.5
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 2.6e-30 136.7 330 32.1
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 4.4e-30 136.0 260 34.2
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 1.7e-29 134.0 313 32.3
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 3.7e-29 132.9 250 37.2
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 4.9e-29 132.5 308 33.1
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 4.9e-29 132.5 262 34.4
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 4.9e-29 132.5 262 34.4
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 2.4e-28 130.2 185 42.2
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 7.0e-28 128.6 264 34.5
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.6e-27 127.5 261 35.2
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 2.0e-27 127.1 262 33.2
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 2.0e-27 127.1 271 32.8
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.7e-26 124.0 262 32.8
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.5e-25 120.9 263 33.8
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.5e-25 120.9 253 33.6
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 3.3e-25 119.8 260 32.7
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 5.6e-25 119.0 294 31.3
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 7.3e-25 118.6 269 31.6
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 4.7e-24 115.9 209 38.3
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.4e-23 114.4 262 32.1
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 1.8e-23 114.0 121 45.5
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 5.2e-23 112.5 254 34.3
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 1.2e-22 111.3 247 32.4
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 2.6e-22 110.2 249 33.3
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 3.4e-22 109.8 260 29.6
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 5.8e-22 109.0 253 36.0
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 5.8e-22 109.0 117 48.7
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 9.8e-22 108.2 289 31.1
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.3e-21 107.8 100 53.0
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.3e-21 107.8 253 31.2
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.7e-21 107.5 288 30.6
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 2.2e-21 107.1 254 33.5
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 4.9e-21 105.9 253 34.8
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.1e-20 104.8 292 29.5
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 1.1e-20 104.8 254 33.9
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 2.4e-20 103.6 254 33.9
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.6e-19 100.9 104 48.1
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 5.1e-18 95.9 253 32.0
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 9.5e-17 91.7 124 37.9
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 1.6e-16 90.9 124 44.4
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 3.1e-15 86.7 266 28.9
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 2.9e-13 80.1 73 53.4
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 2.4e-12 77.0 120 40.0
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.2e-12 76.6 64 60.9
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 4.1e-12 76.3 147 34.7
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 5.4e-12 75.9 64 60.9
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 1.2e-11 74.7 154 37.7
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 2.1e-11 73.9 198 30.3
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 2.7e-11 73.6 194 30.4
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 6.0e-11 72.4 77 50.6
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 1.3e-10 71.2 153 34.0
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 1.7e-10 70.9 121 33.1
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.5e-09 67.0 140 37.1
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 3.3e-09 66.6 139 40.3
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 3.3e-09 66.6 112 36.6
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 7.3e-09 65.5 146 31.5
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 9.6e-09 65.1 98 35.7
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 1.2e-08 64.7 162 32.1
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 4.7e-08 62.8 116 31.9
Sed0016055 Sechium edule HOM05D000336 ORTHO05D002705 3.1e-07 60.1 102 33.3
arahy.Tifrunner.gnm1.ann1.90FR5C Arachis hypogaea HOM05D000336 ORTHO05D002705 4.0e-07 59.7 98 33.7
arahy.Tifrunner.gnm1.ann1.AFBY4F Arachis hypogaea HOM05D000336 ORTHO05D002705 4.0e-07 59.7 98 33.7
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 4.0e-07 59.7 154 33.1
MELO3C002885.2 Cucumis melo HOM05D000336 ORTHO05D002705 8.9e-07 58.5 124 31.5
CsaV3_5G025830 Cucumis sativus L. HOM05D000336 ORTHO05D002705 8.9e-07 58.5 124 31.5
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 8.9e-07 58.5 100 33.0
ClCG09G020540 Citrullus lanatus HOM05D000336 ORTHO05D002705 1.2e-06 58.2 124 30.6
Phvul.004G074600 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 2.0e-06 57.4 101 33.7
Potri.001G073800 Populus trichocarpa HOM05D000336 ORTHO05D002705 2.0e-06 57.4 97 29.9
Duzib106G1105 Durio zibethinus HOM05D000336 ORTHO05D002705 2.6e-06 57.0 106 32.1
Glyma.17G182700 Glycine max HOM05D000336 ORTHO05D002705 2.6e-06 57.0 101 32.7
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 3.4e-06 56.6 121 30.6
Manes.07G103100 Manihot esculenta HOM05D000336 ORTHO05D002705 3.4e-06 56.6 169 28.4
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 4.4e-06 56.2 87 31.0
Lsat_1_v5_gn_1_75080 Lactuca sativa HOM05D000336 ORTHO05D002705 5.8e-06 55.8 92 30.4
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 5.8e-06 55.8 133 28.6
Ca_22535_v3 Cicer arietinum L. HOM05D000336 ORTHO05D002705 7.6e-06 55.5 166 29.5
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 7.6e-06 55.5 92 31.5
Medtr6g033375 Medicago truncatula HOM05D000336 ORTHO05D002705 7.6e-06 55.5 105 31.4
PSO384G0900 Papaver somniferum HOM05D000336 ORTHO05D002705 7.6e-06 55.5 108 32.4
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 7.6e-06 55.5 167 28.1
Potri.008G043000 Populus trichocarpa HOM05D000336 ORTHO05D002705 7.6e-06 55.5 103 31.1
GSVIVG01034328001 Vitis vinifera HOM05D000336 ORTHO05D002705 7.6e-06 55.5 105 31.4
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 9.9e-06 55.1 98 27.6


User provided reference genes

Program Settings