Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014730.2 Cucumis melo HOM05D006633 ORTHO05D008259 2.6e-225 785.0 395 100.0
CsaV3_4G017570 Cucumis sativus L. HOM05D006633 ORTHO05D008259 3.0e-197 691.8 389 90.2
Sed0023197 Sechium edule HOM05D006633 ORTHO05D008259 7.7e-124 448.0 279 80.3
QL01p010451 Quercus lobata HOM05D006633 ORTHO05D008259 2.9e-99 366.3 260 70.8
Eucgr.B03588 Eucalyptus grandis HOM05D006633 ORTHO05D008259 1.6e-97 360.5 260 70.8
FAN16G0253 Fragaria x ananassa HOM05D006633 ORTHO05D008259 3.6e-97 359.4 255 71.8
Prupe.6G001800 Prunus persica HOM05D006633 ORTHO05D008259 4.7e-97 359.0 274 70.1
Ciclev10015880m.g Citrus clementina HOM05D006633 ORTHO05D008259 2.3e-96 356.7 246 72.0
Manes.17G052500 Manihot esculenta HOM05D006633 ORTHO05D008259 4.0e-96 355.9 228 73.7
CiPaw.13G178900 Carya illinoinensis HOM05D006633 ORTHO05D008259 5.2e-96 355.5 215 81.4
PGR102G1790 Punica granatum HOM05D006633 ORTHO05D008259 1.5e-95 354.0 242 71.9
FAN21G1569 Fragaria x ananassa HOM05D006633 ORTHO05D008259 2.0e-95 353.6 255 70.6
CANSAT11G1927 Cannabis sativa HOM05D006633 ORTHO05D008259 3.4e-95 352.8 281 64.8
GSVIVG01025500001 Vitis vinifera HOM05D006633 ORTHO05D008259 3.4e-95 352.8 215 80.0
Potri.003G222900 Populus trichocarpa HOM05D006633 ORTHO05D008259 4.4e-95 352.4 292 63.4
MD11G1001800 Malus domestica HOM05D006633 ORTHO05D008259 5.7e-95 352.1 276 67.4
RcHm_v2.0_Chr5g0084001 Rosa chinensis HOM05D006633 ORTHO05D008259 5.7e-95 352.1 254 69.7
TWI34G2025 Tripterygium wilfordii HOM05D006633 ORTHO05D008259 5.7e-95 352.1 253 70.4
Atru.chr3.2065 Acer truncatum HOM05D006633 ORTHO05D008259 7.5e-95 351.7 214 80.4
Cpa.g.sc119.27 Carica papaya HOM05D006633 ORTHO05D008259 1.7e-94 350.5 265 66.4
Sabra03G0165800 Salix brachista HOM05D006633 ORTHO05D008259 1.7e-94 350.5 270 65.9
COL.COLO4_35074 Corchorus olitorius HOM05D006633 ORTHO05D008259 6.3e-94 348.6 219 77.6
Actinidia00914 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.1e-93 347.8 248 69.0
FAN11G3357 Fragaria x ananassa HOM05D006633 ORTHO05D008259 1.1e-93 347.8 249 71.1
Oeu060898.1 Olea europaea HOM05D006633 ORTHO05D008259 1.1e-93 347.8 250 70.8
Duzib168G0472 Durio zibethinus HOM05D006633 ORTHO05D008259 3.1e-93 346.3 281 64.4
Lj2A793G3 Lonicera japonica HOM05D006633 ORTHO05D008259 9.1e-93 344.7 221 74.7
Gohir.D08G024900 Gossypium hirsutum HOM05D006633 ORTHO05D008259 1.6e-92 344.0 209 78.5
HanXRQChr14g0437151 Helianthus annuus HOM05D006633 ORTHO05D008259 2.7e-92 343.2 247 70.0
Thecc.09G197800 Theobroma cacao HOM05D006633 ORTHO05D008259 2.7e-92 343.2 215 76.3
Gohir.A08G014400 Gossypium hirsutum HOM05D006633 ORTHO05D008259 5.9e-92 342.0 254 67.7
Gorai.004G020300 Gossypium raimondii HOM05D006633 ORTHO05D008259 5.9e-92 342.0 209 78.0
Actinidia16230 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.3e-91 340.9 266 64.7
TAR633G1699 Trochodendron aralioides HOM05D006633 ORTHO05D008259 1.3e-91 340.9 273 65.9
Nn7g35825 Nelumbo nucifera HOM05D006633 ORTHO05D008259 6.6e-91 338.6 227 73.1
CAN.G431.4 Capsicum annuum HOM05D006633 ORTHO05D008259 1.1e-90 337.8 254 69.3
Sopen01g017000 Solanum pennellii HOM05D006633 ORTHO05D008259 3.3e-90 336.3 275 62.9
Cc01_g00320 Coffea canephora HOM05D006633 ORTHO05D008259 7.2e-90 335.1 205 77.6
SGA_v2.0_scaffold3G01722 Striga asiatica HOM05D000412 ORTHO05D000429 7.2e-90 335.1 258 66.3
THA.LOC104813477 Tarenaya hassleriana HOM05D006633 ORTHO05D008259 9.5e-90 334.7 245 69.0
Phvul.002G101000 Phaseolus vulgaris HOM05D006633 ORTHO05D008259 1.2e-89 334.3 270 63.0
PSO384G1804 Papaver somniferum HOM05D006633 ORTHO05D008259 1.6e-89 334.0 201 77.1
Solyc01g028870.3 Solanum lycopersicum HOM05D006633 ORTHO05D008259 1.6e-89 334.0 253 66.8
PSO339G0565 Papaver somniferum HOM05D006633 ORTHO05D008259 3.6e-89 332.8 229 71.2
ECA238G0103 Erigeron canadensis HOM05D006633 ORTHO05D008259 4.7e-89 332.4 242 68.6
Lsat_1_v5_gn_2_51040 Lactuca sativa HOM05D006633 ORTHO05D008259 1.0e-88 331.3 273 64.1
CARHR233930 Cardamine hirsuta HOM05D006633 ORTHO05D008259 2.3e-88 330.1 234 70.1
Nitab4.5_0008322g0010 Nicotiana tabacum HOM05D006633 ORTHO05D008259 4.0e-88 329.3 232 70.3
Nitab4.5_0000075g0280 Nicotiana tabacum HOM05D006633 ORTHO05D008259 6.8e-88 328.6 231 71.4
Rhsim13G0234200 Rhododendron simsii HOM05D006633 ORTHO05D008259 8.9e-88 328.2 207 77.3
AL7G26590 Arabidopsis lyrata HOM05D006633 ORTHO05D008259 5.7e-87 325.5 233 70.4
AT4G26370 Arabidopsis thaliana HOM05D006633 ORTHO05D008259 1.7e-86 323.9 233 70.0
Aa31LG5G11730 Aethionema arabicum HOM05D006633 ORTHO05D008259 2.2e-86 323.6 208 74.0
Thhalv10025833m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 2.2e-86 323.6 233 69.1
Haze_22925 Corylus avellana HOM05D006633 ORTHO05D008259 3.7e-86 322.8 214 75.2
Sp7g24290 Schrenkiella parvula HOM05D006633 ORTHO05D008259 3.7e-86 322.8 215 73.5
BcaNung02426 Brassica carinata HOM05D006633 ORTHO05D008259 1.1e-85 321.2 215 73.5
C07p54850 Brassica napus HOM05D006633 ORTHO05D008259 1.8e-85 320.5 243 67.1
BcaC06g32755 Brassica carinata HOM05D006633 ORTHO05D008259 2.4e-85 320.1 243 66.7
Carub.0007s1458 Capsella rubella HOM05D006633 ORTHO05D008259 2.4e-85 320.1 233 69.1
Ca_18789_v3 Cicer arietinum L. HOM05D006633 ORTHO05D008259 3.1e-85 319.7 236 68.6
arahy.Tifrunner.gnm1.ann1.B7F07X Arachis hypogaea HOM05D006633 ORTHO05D008259 4.1e-85 319.3 219 69.9
Migut.D02577 Erythranthe guttata HOM05D006633 ORTHO05D008259 4.1e-85 319.3 236 66.1
BraA03t14735Z Brassica rapa HOM05D006633 ORTHO05D008259 9.2e-85 318.2 243 66.7
C01p22200 Brassica napus HOM05D006633 ORTHO05D008259 1.2e-84 317.8 218 72.0
BolC1t02150H Brassica oleracea HOM05D006633 ORTHO05D008259 1.2e-84 317.8 218 72.0
BraA01t01713Z Brassica rapa HOM05D006633 ORTHO05D008259 1.6e-84 317.4 218 72.0
MSTRG.18887 Avicennia marina HOM05D006633 ORTHO05D008259 2.0e-84 317.0 208 72.6
Lalb_Chr09g0328921 Lupinus albus HOM05D006633 ORTHO05D008259 2.0e-84 317.0 272 59.2
SalBow2G0284 Salvia bowleyana HOM05D006633 ORTHO05D008259 2.0e-84 317.0 204 74.0
Aqoxy2G00572 Aquilegia oxysepala HOM05D006633 ORTHO05D008259 2.7e-84 316.6 214 71.0
A01p17600 Brassica napus HOM05D006633 ORTHO05D008259 5.9e-84 315.5 218 71.6
Glyma.07G224400 Glycine max HOM05D006633 ORTHO05D008259 7.8e-84 315.1 274 59.9
A03p56650 Brassica napus HOM05D006633 ORTHO05D008259 2.9e-83 313.2 242 65.7
Glyma.20G024400 Glycine max HOM05D006633 ORTHO05D008259 3.8e-83 312.8 201 74.1
Lj4g0000825 Lotus japonicus HOM05D006633 ORTHO05D008259 5.0e-83 312.4 250 63.2
DCAR_001964 Daucus carota HOM05D006633 ORTHO05D008259 2.1e-81 307.0 203 72.4
Psat7g133240 Pisum sativum HOM05D006633 ORTHO05D008259 3.1e-80 303.1 233 66.5
BcaC09g50693 Brassica carinata HOM05D006633 ORTHO05D008259 5.2e-80 302.4 224 67.9
Peaxi162Scf00186g01010 Petunia axillaris HOM05D006633 ORTHO05D008259 1.1e-77 294.7 228 67.1
ATR0697G106 Amborella trichopoda HOM05D006633 ORTHO05D008259 1.4e-77 294.3 237 61.2
Hund16643 Selenicereus undatus HOM05D006633 ORTHO05D008259 2.3e-75 287.0 259 58.3
Os03g0656900 Oryza sativa ssp. japonica HOM05D006633 ORTHO05D008259 6.6e-75 285.4 273 53.5
HPP92_027714 Vanilla planifolia HOM05D006633 ORTHO05D008259 6.6e-75 285.4 197 67.5
Ah.01g020780 Amaranthus hybridus HOM05D006633 ORTHO05D008259 1.6e-73 280.8 223 62.8
VMungo0251G3366 Vigna mungo HOM05D006633 ORTHO05D008259 1.6e-73 280.8 239 61.1
BcaC06g32753 Brassica carinata HOM05D006633 ORTHO05D008259 6.2e-73 278.9 219 66.2
AUR62011548 Chenopodium quinoa HOM05D006633 ORTHO05D008259 1.1e-72 278.1 252 58.7
Sc22g0000060 Simmondsia chinensis HOM05D006633 ORTHO05D008259 1.1e-72 278.1 185 69.7
TPR.G34055 Trifolium pratense HOM05D006633 ORTHO05D008259 4.9e-70 269.2 180 72.2
arahy.Tifrunner.gnm1.ann1.UCUG5X Arachis hypogaea HOM05D006633 ORTHO05D008259 1.2e-68 264.6 266 53.0
Medtr4g083370 Medicago truncatula HOM05D006633 ORTHO05D008259 1.3e-67 261.2 250 57.2
Sc11g0009420 Simmondsia chinensis HOM05D006633 ORTHO05D008259 6.6e-67 258.8 172 70.3
unitig_22.g5858 Utricularia gibba HOM05D006633 ORTHO05D008259 2.8e-65 253.4 207 62.8
FAN25G3644 Fragaria x ananassa HOM05D006633 ORTHO05D008259 1.7e-62 244.2 232 56.9
FvH4_3g45910 Fragaria vesca HOM05D006633 ORTHO05D008259 2.1e-60 237.3 187 65.8
Hma1.2p1_2123F.1_g314533 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 3.3e-58 229.9 144 76.4
Thhalv10026040m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 1.9e-53 214.2 157 67.5
Zm00001eb052690 Zea mays HOM05D006633 ORTHO05D008259 1.3e-51 208.0 197 52.8
ClCG02G024430 Citrullus lanatus HOM05D006633 ORTHO05D008259 2.5e-50 203.8 112 91.1
SMO228G0116 Selaginella moellendorffii HOM05D006633 ORTHO05D008259 3.6e-41 173.3 197 43.7
vmacro04274 Vaccinium macrocarpon HOM05D006633 ORTHO05D008259 6.2e-41 172.6 151 59.6
CSS0002459 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 8.4e-38 162.2 92 82.6
Pp3c10_23950 Physcomitrium patens HOM05D006633 ORTHO05D008259 7.1e-37 159.1 196 41.8
CSS0031986 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 8.7e-35 152.1 95 75.8
Zm00001eb218200 Zea mays HOM05D006633 ORTHO05D008259 1.4e-32 144.8 110 59.1
EL10Ac9g21929 Beta vulgaris HOM05D006633 ORTHO05D008259 6.4e-30 136.0 92 68.5
Hund09324 Selenicereus undatus HOM05D006633 ORTHO05D008259 6.4e-30 136.0 82 76.8
Mapoly0006s0155 Marchantia polymorpha HOM05D006633 ORTHO05D008259 2.7e-28 130.6 250 32.0
AUR62016367 Chenopodium quinoa HOM05D006633 ORTHO05D008259 3.9e-27 126.7 92 62.0
HanXRQChr15g0489901 Helianthus annuus HOM05D006633 ORTHO05D008259 1.1e-21 108.6 77 67.5
Hma1.2p1_1877F.1_g306330 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 1.4e-21 108.2 127 50.4
SEGI_24744 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 2.1e-20 104.4 75 61.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.1e-18 98.6 138 50.7
CDE10G1061 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 5.7e-18 96.3 67 67.2
COL.COLO4_37952 Corchorus olitorius HOM05D006633 ORTHO05D008259 1.1e-16 92.0 58 70.7
HanXRQChr11g0336181 Helianthus annuus HOM05D006633 ORTHO05D008259 3.1e-16 90.5 70 64.3
CDE10G0014 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 3.2e-13 80.5 76 60.5
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 5.5e-13 79.7 149 44.3
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 9.4e-13 79.0 59 61.0
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 2.0e-10 71.2 143 40.6
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 4.3e-10 70.1 147 42.2
SEGI_20653 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 1.8e-08 64.7 46 65.2
AagrBONN_evm.TU.Sc2ySwM_117.296 Anthoceros agrestis HOM05D006633 ORTHO05D008259 4.5e-07 60.1 60 46.7
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 5.9e-07 59.7 145 37.2
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 5.0e-06 56.6 144 36.8


User provided reference genes

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