Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.0e-66 255.8 139 100.0
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.3e-65 253.1 139 98.6
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 5.7e-58 227.6 139 87.8
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.2e-57 225.7 139 87.1
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.8e-57 225.3 139 87.1
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.3e-57 224.2 139 86.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 8.3e-57 223.8 139 86.3
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.4e-56 223.0 140 86.4
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.4e-56 223.0 139 86.3
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 87.8
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 85.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.1e-56 221.9 139 87.1
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.0e-56 220.7 139 85.6
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 7.0e-56 220.7 140 85.7
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 9.1e-56 220.3 140 86.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.2e-55 219.9 139 85.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.6e-55 219.5 139 85.6
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 84.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 84.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 86.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 86.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 85.6
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 84.2
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 82.0
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.5e-55 218.0 139 84.9
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.3e-54 216.5 139 83.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 2.3e-54 215.7 139 84.9
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 8.6e-54 213.8 139 83.5
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 82.9
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 82.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.9e-53 212.6 135 85.2
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 82.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 82.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.3e-53 211.8 141 83.0
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 5.6e-53 211.1 138 81.9
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 5.6e-53 211.1 140 82.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 7.2e-53 210.7 139 82.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 9.5e-53 210.3 139 82.0
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 81.4
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.6e-52 209.5 138 80.4
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.8e-52 208.8 139 80.6
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.6e-52 208.4 140 79.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 4.7e-52 208.0 140 80.7
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 6.1e-52 207.6 141 80.9
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 8.0e-52 207.2 139 79.9
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 8.0e-52 207.2 142 81.7
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 8.0e-52 207.2 139 82.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-51 206.8 139 81.3
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-51 206.8 139 81.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.8e-51 206.1 139 80.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.8e-51 206.1 136 79.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.0e-51 205.3 141 80.1
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 3.0e-51 205.3 147 76.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.0e-51 205.3 143 77.6
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.2e-51 204.5 139 79.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 6.8e-51 204.1 143 79.0
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 6.8e-51 204.1 140 78.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 8.9e-51 203.8 138 79.7
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 8.9e-51 203.8 142 78.2
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.2e-50 203.4 141 77.3
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.2e-50 203.4 139 81.3
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.5e-50 203.0 140 78.6
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.5e-50 203.0 143 78.3
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.5e-50 203.0 139 81.3
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.0e-50 202.6 139 78.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.6e-50 202.2 138 79.7
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.4e-50 201.8 148 77.0
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.4e-50 201.8 113 96.5
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 4.4e-50 201.4 140 77.9
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 5.7e-50 201.1 139 77.7
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 5.7e-50 201.1 139 77.7
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 5.7e-50 201.1 139 80.6
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 7.5e-50 200.7 140 78.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 7.5e-50 200.7 139 78.4
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 7.5e-50 200.7 138 79.0
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.3e-49 199.9 140 77.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-49 199.5 139 77.7
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.7e-49 199.5 139 79.9
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.2e-49 199.1 164 70.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 4.9e-49 198.0 138 78.3
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 6.4e-49 197.6 153 73.2
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 8.3e-49 197.2 138 78.3
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 3.2e-48 195.3 141 76.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.1e-48 194.9 141 78.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.4e-48 194.5 160 69.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 7.0e-48 194.1 151 72.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 7.0e-48 194.1 151 72.8
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 7.0e-48 194.1 140 75.7
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-47 193.4 149 73.2
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.0e-47 192.6 139 75.5
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.5e-47 191.8 144 72.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-46 190.3 139 75.5
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-46 189.9 144 72.2
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.3e-46 189.1 140 74.3
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.3e-46 189.1 139 75.5
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.9e-46 188.3 139 74.8
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-45 186.8 135 76.3
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.5e-45 186.4 141 75.2
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.5e-45 185.7 146 70.5
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.3e-45 185.3 152 69.1
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.3e-45 185.3 148 70.3
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 7.3e-45 184.1 155 67.7
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 7.3e-45 184.1 155 67.7
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 9.5e-45 183.7 173 62.4
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.1e-44 182.6 139 73.4
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 4.7e-44 181.4 175 60.6
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.7e-44 181.4 113 86.7
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 3.1e-43 178.7 167 62.3
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 6.8e-43 177.6 135 74.1
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.7e-41 171.8 135 68.9
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.2e-40 168.7 115 79.1
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.2e-40 168.7 136 69.9
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-39 166.8 113 79.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 4.6e-39 164.9 119 76.5
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-38 162.9 116 77.6
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.3e-38 162.5 136 65.4
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 8.6e-38 160.6 135 65.2
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 4.3e-37 158.3 165 55.8
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 5.6e-37 157.9 126 73.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-35 152.9 135 65.9
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.1e-35 152.1 113 75.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 6.8e-35 151.0 135 66.7
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 9.8e-34 147.1 109 75.2
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 9.8e-34 147.1 97 82.5
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 6.4e-33 144.4 131 64.9
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.9e-32 142.9 167 53.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.3e-30 136.0 135 56.3
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 7.3e-29 131.0 115 66.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 9.5e-29 130.6 112 68.8
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.2e-28 130.2 136 56.6
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.6e-28 129.8 155 52.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.6e-28 128.6 119 61.3
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 2.3e-27 125.9 85 77.6
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.5e-26 123.2 85 76.5
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.4e-26 122.1 81 84.0
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.4e-26 122.1 80 85.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 4.4e-26 121.7 138 53.6
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.7e-25 118.6 79 82.3
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.9e-25 118.2 76 86.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.4e-25 117.5 80 81.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-24 116.7 80 81.2
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.2e-23 113.6 132 53.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 9.6e-21 104.0 58 87.9
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.6e-20 102.1 68 76.5
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.2e-20 101.3 70 75.7
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 8.1e-20 100.9 69 78.3
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 9.9e-18 94.0 82 63.4
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.1e-16 90.5 101 60.4
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.5e-15 85.5 69 69.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 4.6e-15 85.1 77 61.0
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.1e-13 80.5 57 77.2
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-13 80.5 72 62.5
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.1e-13 80.5 72 62.5
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.4e-11 73.6 131 37.4
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 3.4e-10 68.9 41 80.5
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 8.4e-09 64.3 49 67.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-08 63.9 51 64.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.9e-08 63.2 51 64.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-08 62.4 110 41.8
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 3.2e-08 62.4 110 41.8
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 6.0e-07 58.2 47 68.1
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0


User provided reference genes

Program Settings