Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 9.7e-108 393.7 223 100.0
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 4.5e-105 384.8 223 97.3
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 4.7e-102 374.8 220 95.9
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 3.3e-100 368.6 222 80.2
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.4e-98 363.2 222 79.7
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 6.5e-88 327.8 220 82.3
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 5.2e-85 318.2 223 70.4
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 8.8e-85 317.4 220 82.3
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 9.8e-84 313.9 214 81.8
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.7e-83 313.2 223 68.6
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.8e-83 312.4 223 70.0
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.8e-83 312.4 218 83.9
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 6.3e-83 311.2 223 69.5
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.4e-82 309.3 218 71.1
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 3.1e-82 308.9 221 79.2
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 7.0e-82 307.8 223 69.1
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 7.0e-82 307.8 212 84.4
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.2e-81 307.0 213 85.4
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.6e-81 306.6 219 72.1
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 2.0e-81 306.2 212 84.4
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.7e-81 305.8 220 68.2
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 7.7e-81 304.3 220 78.6
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.0e-80 303.9 220 68.6
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.0e-80 303.9 219 68.9
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.3e-80 303.5 219 79.0
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.7e-80 303.1 223 66.8
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.5e-79 300.1 214 69.2
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.5e-79 300.1 217 78.3
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.9e-79 299.7 220 66.8
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 3.2e-79 298.9 214 68.7
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 3.2e-79 298.9 220 66.4
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.2e-79 298.5 219 66.2
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 5.5e-79 298.1 214 68.7
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 9.4e-79 297.4 214 67.3
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 9.4e-79 297.4 218 69.7
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.4e-79 297.4 219 66.2
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 9.4e-79 297.4 220 79.1
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-78 296.6 219 67.1
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 3.6e-78 295.4 220 66.8
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 6.1e-78 294.7 220 65.9
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 6.1e-78 294.7 223 65.0
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.0e-78 294.3 219 65.8
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.0e-77 293.9 220 76.8
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.0e-77 293.9 211 70.1
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 1.4e-77 293.5 220 67.7
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.8e-77 293.1 212 67.0
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 3.0e-77 292.4 223 64.6
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 4.0e-77 292.0 220 76.8
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 5.2e-77 291.6 210 67.6
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.6e-76 289.3 219 76.3
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 3.4e-76 288.9 215 66.5
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 3.4e-76 288.9 214 65.9
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.4e-76 288.9 213 68.1
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 4.4e-76 288.5 223 65.0
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 7.5e-76 287.7 214 65.9
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.3e-75 287.0 213 66.2
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.3e-75 287.0 214 77.6
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.3e-75 287.0 214 77.6
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 2.2e-75 286.2 221 77.4
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 2.8e-75 285.8 210 66.7
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 2.8e-75 285.8 224 71.0
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 4.9e-75 285.0 212 64.6
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 4.9e-75 285.0 215 78.6
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 4.9e-75 285.0 215 77.2
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 6.3e-75 284.6 210 66.2
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 6.3e-75 284.6 210 66.2
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 8.3e-75 284.3 215 66.0
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 8.3e-75 284.3 215 66.0
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 8.3e-75 284.3 218 64.7
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-74 283.5 210 65.7
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.4e-74 283.5 213 77.5
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.8e-74 283.1 223 62.8
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.4e-74 282.7 213 79.3
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 5.4e-74 281.6 218 77.5
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 7.0e-74 281.2 221 62.0
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.6e-73 280.0 218 62.4
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-73 280.0 219 66.2
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-73 280.0 219 66.2
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-73 280.0 219 66.2
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-73 280.0 219 66.2
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-73 280.0 219 66.2
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.0e-73 279.6 221 62.0
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 3.5e-73 278.9 215 63.7
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 4.5e-73 278.5 216 63.0
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 7.7e-73 277.7 218 73.4
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 7.7e-73 277.7 218 73.4
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.0e-72 277.3 215 73.0
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 1.3e-72 276.9 215 65.1
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.7e-72 276.6 214 64.5
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 2.9e-72 275.8 222 63.5
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 2.5e-71 272.7 215 73.0
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 4.3e-71 271.9 215 63.3
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 7.3e-71 271.2 210 66.2
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 2.1e-70 269.6 215 63.7
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 4.7e-70 268.5 221 60.6
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.0e-69 267.3 217 60.8
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 2.6e-68 262.7 211 60.7
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 9.8e-68 260.8 214 62.1
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 8.3e-67 257.7 220 72.7
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 5.4e-66 255.0 215 60.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 9.2e-66 254.2 210 59.0
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.6e-65 253.4 212 61.8
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 5.9e-65 251.5 215 61.9
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 5.9e-65 251.5 215 61.9
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 3.0e-64 249.2 213 61.5
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 6.6e-64 248.1 223 58.7
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 1.1e-63 247.3 205 60.0
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 5.6e-63 245.0 212 58.5
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 2.1e-62 243.0 220 55.9
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 8.0e-62 241.1 155 74.2
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.4e-61 240.4 153 77.1
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 3.1e-61 239.2 188 62.8
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 3.1e-61 239.2 212 58.5
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 8.9e-61 237.7 210 66.2
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 3.4e-60 235.7 212 58.5
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.4e-58 229.6 154 74.0
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.0e-57 224.9 211 70.1
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.9e-56 222.2 216 53.2
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 1.1e-55 220.7 130 77.7
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.5e-55 219.5 159 66.7
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 2.8e-54 216.1 211 52.6
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 6.2e-54 214.9 220 64.5
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 4.0e-53 212.2 217 52.5
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 5.2e-53 211.8 137 75.2
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 3.4e-52 209.1 210 50.5
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.4e-51 204.9 167 70.1
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 9.2e-50 201.1 139 72.7
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.5e-47 193.7 159 61.0
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.3e-47 192.6 212 47.2
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.6e-47 191.8 210 46.7
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.2e-46 190.7 163 60.1
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.6e-46 190.3 212 66.0
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 6.8e-45 184.9 217 57.1
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 1.3e-43 180.6 131 67.2
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 2.8e-38 162.9 211 46.4
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 6.0e-33 145.2 95 75.8
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 9.6e-31 137.9 95 71.6
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 1.2e-28 131.0 96 90.6
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 3.1e-13 79.7 199 31.2
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 9.6e-07 58.2 114 34.2
Sabra05G0099200 Salix brachista HOM05D003144 ORTHO05D003539 2.8e-06 56.6 106 35.8
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 4.8e-06 55.8 111 29.7
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 6.3e-06 55.5 128 31.2


User provided reference genes

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